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microbiome
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miaViz
Microbiome Analysis Plotting and Visualization
https://microbiome.github.io/miaViz
Artistic License 2.0
10
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12
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Rworkflows: r version to auto
#162
TuomasBorman
closed
5 days ago
0
plotRDA improvements
#161
TuomasBorman
opened
6 days ago
3
add plot method for eigenvalues
#160
Daenarys8
closed
5 days ago
4
Plot eigenvalues
#159
TuomasBorman
closed
5 days ago
3
Bugfix plotRDA
#158
TuomasBorman
closed
3 weeks ago
0
Accessible color palette
#157
TuomasBorman
opened
1 month ago
5
Improve plotAbundance
#156
TuomasBorman
closed
3 weeks ago
1
RDA: option for plotting centroids and species scores
#155
TuomasBorman
closed
1 month ago
0
Update plotRDA and plotLoadings
#154
TuomasBorman
closed
1 month ago
0
plotLoadings modifications
#153
TuomasBorman
closed
1 month ago
6
plotLoadings, absolute scale
#152
TuomasBorman
closed
1 month ago
3
update badges
#151
Daenarys8
closed
1 month ago
4
README
#150
antagomir
closed
1 month ago
2
#639- update plotCCA/RDA
#149
Daenarys8
closed
1 month ago
0
add support for groups other than rank in plotAbundance
#148
Daenarys8
closed
1 month ago
4
Bugfix
#147
TuomasBorman
closed
3 months ago
1
Error in .density_plotter(density_data = density_data, layout = layout, : object 'angle.x.test' not found
#146
RiboRings
closed
3 months ago
2
temporal fix rworkflows
#145
Daenarys8
closed
3 months ago
3
some corrections to test
#144
ake123
closed
3 months ago
2
plotAbundanceDensity: added boxplot and violin
#143
Daenarys8
closed
3 months ago
16
More layouts for plotAbundanceDensity
#142
Daenarys8
closed
3 months ago
0
Switch to mia data (remove microbiomeDataSets data)
#141
antagomir
closed
2 months ago
5
WIP: unify param def
#140
Daenarys8
closed
4 months ago
0
Update plotAbundance.R
#139
TuomasBorman
closed
4 months ago
0
Fix hidden parameters, simplify plotSeries
#138
TuomasBorman
closed
4 months ago
0
Fix ndetection
#137
TuomasBorman
closed
4 months ago
0
Update contributors list
#136
ake123
closed
4 months ago
1
Plot feature loadings function
#135
ElySeraidarian
closed
3 months ago
25
Update params in user facing fxns
#134
Daenarys8
closed
4 months ago
5
Update MARGIN param
#133
Daenarys8
closed
4 months ago
1
plotAbundance improvements
#132
TuomasBorman
closed
3 weeks ago
16
node_colour_by does not colour nodes
#131
RiboRings
opened
5 months ago
8
Orgnanise parameter names
#130
Daenarys8
closed
4 months ago
4
Adding Neatsort Function to miaViz
#129
SHillman836
closed
4 months ago
12
Adding sorting method
#128
SHillman836
closed
5 months ago
19
updated example in docs
#127
SHillman836
closed
5 months ago
0
Strange example #96 - Changing miaViz documentation example
#126
SHillman836
closed
5 months ago
3
changed order_rank_by to order.rows.by with deprecation
#125
Insaynoah
closed
5 months ago
1
Fix plot*Tree
#124
TuomasBorman
closed
6 months ago
0
Error in .merge_tree_vis_data(tree_data, feature_info) : .
#123
RiboRings
closed
6 months ago
3
Adding confidence level as a parameter
#121
ElySeraidarian
closed
6 months ago
6
changed order_rank_by to order_features_by
#120
Insaynoah
closed
6 months ago
3
Replace getPrevalence with addPrevalence
#119
thpralas
closed
5 months ago
5
replace getPrevalent* and getTop* functions
#118
thpralas
closed
5 months ago
2
replace calculateRDA with getRDA and calculateCCA with getCCA
#117
thpralas
closed
5 months ago
3
Add plotNMDS to miaViz
#116
thpralas
closed
5 months ago
7
replace splitByRanks with agglomerateByRanks
#115
thpralas
closed
5 months ago
3
plotAssay
#114
TuomasBorman
closed
5 months ago
7
fix issue 88 plotAbundance rank
#113
Insaynoah
closed
4 months ago
18
Replace cluster with addCluster
#112
thpralas
closed
5 months ago
3
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