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microbiome
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miaViz
Microbiome Analysis Plotting and Visualization
https://microbiome.github.io/miaViz
Artistic License 2.0
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Update MARGIN param
#133
Daenarys8
opened
10 hours ago
0
plotAbundance improvements
#132
TuomasBorman
opened
1 week ago
1
node_colour_by does not colour nodes
#131
RiboRings
opened
2 weeks ago
5
Orgnanise parameter names
#130
Daenarys8
opened
2 weeks ago
4
Adding Neatsort Function to miaViz
#129
SHillman836
opened
2 weeks ago
10
Adding sorting method
#128
SHillman836
closed
4 days ago
19
updated example in docs
#127
SHillman836
closed
3 weeks ago
0
Strange example #96 - Changing miaViz documentation example
#126
SHillman836
closed
4 weeks ago
3
changed order_rank_by to order.rows.by with deprecation
#125
Insaynoah
closed
1 month ago
1
Fix plot*Tree
#124
TuomasBorman
closed
1 month ago
0
Error in .merge_tree_vis_data(tree_data, feature_info) : .
#123
RiboRings
closed
1 month ago
3
Adding confidence level as a parameter
#121
ElySeraidarian
closed
1 month ago
6
changed order_rank_by to order_features_by
#120
Insaynoah
closed
1 month ago
3
Replace getPrevalence with addPrevalence
#119
thpralas
closed
1 week ago
5
replace getPrevalent* and getTop* functions
#118
thpralas
closed
5 days ago
2
replace calculateRDA with getRDA and calculateCCA with getCCA
#117
thpralas
closed
5 days ago
3
Add plotNMDS to miaViz
#116
thpralas
closed
5 days ago
7
replace splitByRanks with agglomerateByRanks
#115
thpralas
closed
5 days ago
3
plotAssay
#114
TuomasBorman
closed
4 weeks ago
7
fix issue 88 plotAbundance rank
#113
Insaynoah
opened
2 months ago
17
Replace cluster with addCluster
#112
thpralas
closed
5 days ago
3
Start using rworkflows, minor fixes
#111
TuomasBorman
closed
2 months ago
0
plotRDA ellipse's confidence level
#110
TuomasBorman
closed
2 weeks ago
1
Internal prevalence calculation function was updated in mia
#109
TuomasBorman
closed
4 months ago
0
replace addTaxonomyTree with addHierarchyTree
#108
thpralas
closed
4 months ago
1
More options from ggplot for plotAbundanceDensity
#122
artur-sannikov
opened
5 months ago
7
plotAbundanceDensity colors
#107
antagomir
opened
6 months ago
0
Fix vignette
#106
TuomasBorman
closed
7 months ago
0
replace deprecations with new funcs
#105
ake123
closed
1 month ago
2
Boxplots significance
#104
antagomir
opened
8 months ago
4
Contributing file
#103
TuomasBorman
closed
8 months ago
0
Fix plotRDA
#102
TuomasBorman
closed
8 months ago
0
plotRDA fix
#101
TuomasBorman
closed
8 months ago
0
Fix vignette
#99
TuomasBorman
closed
9 months ago
0
Remove miaTime
#98
TuomasBorman
closed
9 months ago
0
Disable miaTime chunks in vignette
#97
TuomasBorman
closed
9 months ago
0
Strange example
#96
antagomir
opened
9 months ago
1
plotRDA fixes and docs
#95
RiboRings
closed
9 months ago
0
sysreqs error
#94
TuomasBorman
closed
9 months ago
0
plotRowTree error
#93
TuomasBorman
opened
10 months ago
0
plotRDA, plot loadings
#92
TuomasBorman
opened
10 months ago
1
deprecate Taxa names -> Features
#91
himmil
closed
5 months ago
9
plotAbundanceDensity options
#90
antagomir
opened
10 months ago
0
RDA influences from microViz
#89
antagomir
opened
10 months ago
0
Default ranks
#88
antagomir
opened
10 months ago
3
plotRDA
#87
TuomasBorman
closed
9 months ago
39
argument names
#86
antagomir
opened
10 months ago
0
Update Bioc devel
#85
antagomir
closed
11 months ago
1
Rename agglomerateByRank/Prevalence
#84
Daenarys8
closed
1 month ago
7
update transformCounts to transformAssay
#83
ake123
closed
8 months ago
1
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