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Journal Club today we read an eLife paper that describes a different growth phase for Streptomyces. Not sure if this is represented in OMP.
https://elifesciences.org/content/6/e21738
> Here, we…
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Jin:
Not an immediate action item, but I wanted to make a note....
There are quite a few errors in the extraction of taxonomic descriptions of green sulfur bacteria. This is because they have many …
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# Public Data set
| Dataset | Sparsity (%) |
|:--------|-------------:|
| amgut1_data | 30.40 |
| amgut2_data | 34.60 |
| baxter_crc_data | 27.78 |
| crohns_data | 1.00 |
| glne007_data | 58.88…
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Hi,
I have been using carveme to generate metabolic reconstructions of bacterial isolates and testing them with memote. In the "Charge Balance" test, memote is routinely flagging ~200 reactions wit…
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Hi
after cd in HOME-BIO-master I ran following command
(bowtie2) arpit@jarvis:~/HOME-BIO-master$ /home/arpit/miniconda3/bin/python3.12 Script.py
Error that I get:
Running Shotgun Analysis
…
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A user pointed out to me in https://github.com/mikemc/dada2-reference-databases/issues/1#issue-826059569 problems with some of the taxonomy assignments from our Silva 138 database (https://zenodo.org/…
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@JuulDeWitte In de nieuwe publicatie ontbreken:
```
Bacteria Nostoc commune
Bacteria Nostoc pruniforme
Chromista Ascophyllum nodosum
Chromista Attheya armata
Chromista Bacillaria paxillifer
C…
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I’m getting the following error with SIDEARM:
```
(sidearm) bash-4.2$ cwl-runner --preserve-environment BLASTDB --preserve-environment PERL5LIB /Software/sidearm/bin/cwl-runner 1.0.20170413194156
R…
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Hello,
I need to download genome of multiple bacteria species, and to make it faster, I want to use a bash script:
`#!/bin/bash
species=(
"Bacillus anthracis"
"Bordetella bronchiseptica…
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Hello all,
I have a blastn file conatining 16s blastn results, and almost half of them are classified by Kona as "unassigned" while it's clear they should be assigned. Now, that file contains seve…
ghost updated
7 years ago