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Include the UK BioBank GWAS hits across all traits as another catalog, in addition to EBI.
This overlaps with a current task to include these hits in the LocusZoom API, so this is a timely additio…
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Hello,
I have a plink bfile from the UK Biobank
```
$ ls bfile_chr22.*
bfile_chr22.bed bfile_chr22.bim bfile_chr22.fam bfile_chr22.log
```
...and I am trying to create an LD matrix for…
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**What version of EMX2 are you using (see footer)**
v10.61.x
**Describe the bug**
"Because you searched for" label is applied twice. First before and again after loading the filtered data.
**T…
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Hi,
we have observed two problems with flashfm, using 4 traits with UK Biobank data, that we could not solve on our side.
Both stem from the makeSNPgroups2 function:
1. There are some regio…
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As noted by @faskowit (https://github.com/cMadan/openMorph/pull/2), some of these datasets require applications to gain access (PING, PNC, GSP, ADNI, AIBL, UK Biobank, and more). It would be great to …
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2023_11_13
Three analysis types:
1.
First timepoint: diagnosis
Second timepoint: current date or death
Event: if dead, 1; if alive, 0
2.
First timepoint: date of birth
Second timepoint: date …
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http://purl.obolibrary.org/obo/OBIB_0000732 owns
http://purl.obolibrary.org/obo/OBIB_0000735 is owned by
Object properties should be in RO when possible.
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Hi @bvilhjal ,
It seems indels were excluded by the coord step, as the validated alleles were codes as ```valid_nts = set(['A','T','C','G'])```
Will this reduce the power of risk prediction, bec…
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The pretrained model is fit into UK biobank of which age distribution is [42,64]. But my dataset age distribution is [20,86].
If I use it for validation, would it be not working well on my dataset?
…
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As Table S1 in the original article, both sample prevalence and population prevalence equaled the number of cases divided by the number of controls when data were obtained from a population-based coho…