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Dear all
According to your published paper, I defined regions with a z-normalized similarity score ≤−1.2 and a signal-to-noise ratio of r ≥ 0.6 as the significant changing. When using 40kb resoluti…
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Need a better description and an estimate (0,1/2,1,2,3,5,8,13,20,40,100).
Assign to Carlo and the gEAR team (Joshua, to start)
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Hi! If I have created a modified reference genome by introducing additional chromosomes that are, for instance, translocations between chr1 and chr12, is it possible to simulate Hi-C data using just t…
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I've successfully run the example. I don't understand the output
out/merged_snp/jurkat_chr1/final.tsv.gz
What is the final call? And is what should I use as the measure of confidence?
Thank…
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proposed definition:
A transcriptional cis regulatory region (ranges from 0.5kb to 3kbp) that when located between an enhancer and a promoter, the insulator prevents the enhancer from modulating expre…
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**UniProt UniRule (ID and label):**
GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEA with UR00063877
**Sequences with problematic annotation (ID…
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Please provide as much information as you can:
There may be a reason why we do not have this term, but I can't remember what it is.
I need it to annotate epe1
https://www.pombase.org/reference…
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We would like to be able to annotate a MF activity unit on a specific sub-part of a complex
(discussed with @vanaukenk , but I don't think there is a ticket for this)
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Hello. I believe ChromDiff is still recommended for finding out regions with differential chromatin state and linking it with different expression.
I'd like to give it a try, but I have not been able…
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