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Hi!
I run this command
```
CIRIquant -t 4 \
-1 {input.read1} \
-2 {input.read2} \
--config {input.yaml} \
--library-type {params.libr…
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Current runs show circular RNA candidates that are located within an annotated gene but on the different strand. Is this biological reality or maybe an error in the stranded workflow?
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Hi,
I have done the circular RNA prediction, the files CircCoordinates,CircRNACount,CircSkipJunctions and LinearCount generated.
The CircRNACount file has duplicate rowname with different expression…
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Hi egaffo, thanks for the prompt reply. I tried the new docker but I keep having a similar error:
user@NGS:~/CirComPara$ sudo docker run -u `id -u` --rm -it -v $(pwd):/data egaffo/circompara2:v0.…
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Hello,
first sample was done very well, but my second sample is stucking. My shell output is the following:
-1 SID16126_S10_L001_R1_001.fastq.gz -2 SID16126_S10_L001_R2_001.fastq.gz
[Wed 2022-0…
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### Description of the bug
Hello,
I am trying to run nf-core/circRNA on sncRNA samples, and I encountered an error during the annotation part for some of the samples. I noticed that the samples wi…
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I've been hitting this error, wondering if this is a bug with Ciri?
```
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 64
Rules claiming more threads will be scaled down.
S…
byee4 updated
2 weeks ago
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Hello,
*******1st question*****
I am trying to use the peOverlapNbasesMin option and i need to generate Chimeric.out.junction for further analysis with circexplorer. Here is my command:
$STAR/so…
npont updated
9 months ago
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IS there any option to resume the circompara2 comand from any last point ???
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I assume this is some kind of latency issue, but just in case you've hit the same issue and it's a reproducible one. I'll close it if I can re-trying fixes things.
```
Error in rule ciri_run_ciri_…
byee4 updated
3 weeks ago