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Discussing with @hattrill
- [x] GO:0034587 piRNA metabolic process and GO:1990511 piRNA biosynthetic process seem to have been used interchangeably to mean 'piRNA processing' - we need to review …
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### Describe the question or discussion
Hi,
would it be possible to just change MS:1002665 -- 'regular expression for interaction scores derived from cross-linking' -- so that it allows a negative s…
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as titled, with no variants. I guess to just make sure that ORFs are discovered properly
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SearchGUI on usegalaxy.eu requests a json file that is not described here. What is the format of this "Identification Parameters file"? Can you provide details on what it should contain?
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Hi there!
Sorry to bother you again.
I'm still running into issues with the decoding step.
Running this sequence with SignalP 6.0e raises an error:
```
>P000004B9
MAFRLFAGITGRQLLAGGAALGGTG…
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The Toll signaling pathway GO:0008063 is described as "A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Toll on the surface of a target cell, and end…
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Manuscript is accepted in principle, we just need to make these updates!
Reviewer 1:
- [x] 1.1 #1185
- [x] 1.2 #1185
- [x] 1.3 #1187
- [x] 1.4 #1185
- [x] 1.5 #1185
- [x] 1.6 #1191
Rev…
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The article describing this approach is attached. The key is Equation (10).
Basically, we should have two decoy databases that are the same size as the target. In one of the decoys, both peptides a…
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When we digest proteins with a certain number of missed cleavages (0:M), the maximum number of cleavage sites per peptide is expected to be in the ranges (0, M). But for a certain number of peptides, …
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Credit to @bitbyte2015 for being the original one (to my knowledge) to find these sequences!
This potential sublineage features interesting mutations that make it distinct, and although it has been…