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Hi,
I'm working with data with loads of human DNA and little, if any, bacterial DNA. To avoid cross-sample contamination, we have performed DNA extraction and library prep alternating a tissue sample…
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Hi,
I am having a very strange problem. So I have a 300-400Mb plant genome. The problem is that when I run GenomeScope2 in the histogram I obtain a 4Mb genome size (results here http://qb.cshl.edu/…
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>Take the liberty to borrow the post owner's place. I want to ask where my error occurred. It always occurs No valid Assembly graph found.@Kinggerm
First, the code I used:get_organelle_from_reads.py …
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Just installed metamos on a new system - and the test suite is failing with an error in matplotlib .
note: I recently removed the latest version of matplotlib and downgraded to v1.3.1, as recommend …
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Dear @brianjohnhaas
Trinity is a very nice tool packed with many features. We have been using it frequently in the past. Now one question: Trinity can measure gene expression, it seems roughly usi…
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Hi, thanks for your amazing work on de novo peptide sequencing. I have been trying to reproduce your work and results on the nine-species benchmark with NovoB. I download the data and model weights fr…
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Hello,
I have 2 pooled snATAC donors and their individual bulk RNA-seq data. To demultiplex, my strategy was to call common variant SNPs for the two individuals separately using CellSNP, followed b…
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I have just started exploring use of DMRcate for DMR detection but have concerns about the approaches dmrcate offers for ranking DMRs. DMRcate offers Fisher's combination, Stouffer's combination, and …
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When trying to figure out how to document metabarcoding data, I came across some things that were not super clear to me.
Any insight in this question is much appreciated, and perhaps the terms could …