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We commonly would like to be able to investigate which haplotypes carry which mutations, particularly non-synonymous SNPs and CNVs. This is usually in the context of investigating a locus under recent…
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Hi,
Regarding the `scipy.cluster.hierarchy.dendrogram` function, there's a [comment block](https://github.com/scipy/scipy/blob/d2eaf4cd6c34fe34ec9eb454a4fbd68a2dc171b2/scipy/cluster/hierarchy.py#L326…
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Hi @Vannghia69. I just now had a chance to test your new implementation of the dendrogram optimization on a more realistic and larger dataset: depending on the size and the "alignability" (i.e. how ea…
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> Please provide example datasets and the code you use. It will help me to understand your problem and help you!
Is there a way to extract the dendrogram formed from splitting the heatmap with a ca…
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I'm reporting 3 different representations for my clustering: colored dendrogram, PCA scatterplot and silhouette thanks to fviz_cluster, fviz_dend and fviz_silhouette respectively. I'm facing the follo…
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![Screen Shot 2019-08-12 at 3 40 58 PM](https://user-images.githubusercontent.com/54042691/62903495-b9c36a80-bd17-11e9-92ef-f6e2573b91a8.png)
Hi Philip,
Could you please explain the 0-80000 scale o…
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These fellows: http://www.mathworks.com/help/stats/dendrogram.html
Traceback:
![screen shot 2015-04-30 at 9 08 17 pm](https://cloud.githubusercontent.com/assets/1865834/7426365/666c6736-ef91-11e4-80…
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I might be wrong here, but it looks like the scipy linkage call invoked for the dendrogram is silently producing misleading output. The function signature for linkage expects either a condensed format…
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In some cases, it is possible to get the following error
```
---------------------------------------------------------------------------
UnboundLocalError Traceback (most re…
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3.2.1: Show level dendrogram containing 5 instances of each digit (one person)
3.2.2: Use K-Mean clustering to compress each digit into 5 clusters, as done in 3.1.1, and perform hierarchical cluste…