navis-org pymaid issues

navis-org / pymaid

Python library to interface with CATMAID servers. Fully interoperable with navis.

https://pymaid.readthedocs.io/en/latest/

GNU General Public License v3.0

24 stars 11 forks source link

issues

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Fix link types

#248 schlegelp closed 3 months ago
1
Client session for fetching data from CATMAID throws an error

#247 Marei33 opened 6 months ago
9
Bump setuptools from 57.5.0 to 65.5.1 in /docs

#246 dependabot[bot] opened 7 months ago
0
connection to server reset by peer during get_neuron call

#245 rbetzel opened 7 months ago
5
pymaid.get_annotation_details fails with exception

#244 pnewstein opened 7 months ago
4
Exporting skeletons as object files

#243 conochur opened 8 months ago
3
Test refactor

#242 clbarnes opened 10 months ago
1
Nearest node

#241 perlman opened 1 year ago
0
Plotting multi-group neurons with distinct Colors for Axons, Dendrites, and Soma

#240 KeJiiii opened 1 year ago
2
Drop python 3.7, 3.8

#239 clbarnes closed 10 months ago
4
Fetching image data from N5 sources

#238 clbarnes closed 10 months ago
2
Neuron label

#237 clbarnes closed 1 year ago
0
Neuron label logic

#236 clbarnes closed 1 year ago
2
Use CATMAID stack info to create xarray.DataArrays

#235 clbarnes closed 10 months ago
0
Landmark match

#234 clbarnes closed 10 months ago
0
get_volume uses mesh IDs, not volume IDs

#233 clbarnes opened 1 year ago
0
Deprecate get_annotation_graph for get_entity_graph

#232 clbarnes closed 1 year ago
4
Paginate get_entity_graph response as it's very slow

#231 clbarnes opened 1 year ago
1
Pymaid seems incompatible with numpy 1.24.0

#230 jialumaomao closed 1 year ago
3
get_skids_by_name with empty list

#229 clbarnes opened 1 year ago
0
Add get_skeleton_ids to api.rst

#228 clbarnes closed 1 year ago
0
function for list_skeletons endpoint

#227 clbarnes closed 1 year ago
1
Annotation graph fixes, logging normalisation

#226 clbarnes closed 2 years ago
1
docs: update igraph installation instructions

#225 szhorvat closed 2 years ago
2
Docs broken

#224 clbarnes opened 2 years ago
0
Landmarks

#223 clbarnes closed 2 years ago
0
Update versions in gha

#222 clbarnes closed 2 years ago
0
Do not use regex for exact annotation name matches

#221 clbarnes closed 2 years ago
1
Using regex for exact matches misbehaves for special characters

#220 clbarnes closed 2 years ago
0
Leaked Semaphore Objects when running Navis.cut_skeleton

#219 thejordanrivers opened 2 years ago
1
Unable to fetch data from Platynereis Dataset

#218 kareef928 opened 2 years ago
5
TypeError when trying to fetch connectors

#217 bdpedigo closed 2 years ago
3
`heal_skeleton` replaced `heal_fragmented_neuron`.

#216 perlman closed 2 years ago
1
requests.exceptions.ConnectionError:

#215 dadanhan closed 3 years ago
11
navis.cable_overlap on axon/dendrite fragments - non-unique neuron ID problem?

#214 kuanawanda closed 3 years ago
4
get_connectors raises AttributeError when there are no synapses of requested relation_type

#213 kuanawanda closed 3 years ago
1
pymaid.connectivity.cable_overlap raises KeyError exception

#212 kuanawanda closed 3 years ago
2
KeyError: 13 when using 'get_connectors_between'

#211 cytheria43 closed 3 years ago
7
ValueError: Cannot setitem on a Categorical with a new category, set the categories first

#210 pgibb96 closed 3 years ago
6
module 'pymaid' has no attribute 'split_axon_dendrite' (and others)

#209 eddie2612 closed 3 years ago
6
module 'pymaid' has no attribute 'Viewer'

#208 michaelsmclayton closed 3 years ago
5
get_node_list in delete_nodes sometimes fails to get connector link IDs

#207 jasper-tms closed 3 years ago
3
module 'pymaid' has no attribute 'CatmaidInstance'

#206 pgibb96 opened 3 years ago
31
Update master to 2.0.0

#205 schlegelp closed 3 years ago
0
SOLVED: "Could not load the Qt platform plugin "xcb" in "" even though it was found"

#204 jasper-tms opened 4 years ago
2
Test pymaid 0.2.0

#203 schlegelp closed 3 years ago
5
Incorporate Jasper's upload changes

#202 schlegelp closed 4 years ago
0
'DataFrame' object has no attribute 'ix' index

#201 SridharJagannathan closed 3 years ago
2
Remove non ASCII characters

#200 nilsec closed 4 years ago
1
Improvement to upload_neuron's handling of connectors and connector tags

#199 jasper-tms closed 4 years ago
8