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navis-org
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pymaid
Python library to interface with CATMAID servers. Fully interoperable with navis.
https://pymaid.readthedocs.io/en/latest/
GNU General Public License v3.0
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Client session for fetching data from CATMAID throws an error
#247
Marei33
opened
2 months ago
9
Bump setuptools from 57.5.0 to 65.5.1 in /docs
#246
dependabot[bot]
opened
4 months ago
0
connection to server reset by peer during get_neuron call
#245
rbetzel
opened
4 months ago
5
pymaid.get_annotation_details fails with exception
#244
pnewstein
opened
4 months ago
4
Exporting skeletons as object files
#243
conochur
opened
4 months ago
3
Test refactor
#242
clbarnes
opened
7 months ago
1
Nearest node
#241
perlman
opened
10 months ago
0
Plotting multi-group neurons with distinct Colors for Axons, Dendrites, and Soma
#240
KeJiiii
opened
11 months ago
2
Drop python 3.7, 3.8
#239
clbarnes
closed
7 months ago
4
Fetching image data from N5 sources
#238
clbarnes
closed
7 months ago
2
Neuron label
#237
clbarnes
closed
1 year ago
0
Neuron label logic
#236
clbarnes
closed
1 year ago
2
Use CATMAID stack info to create xarray.DataArrays
#235
clbarnes
closed
7 months ago
0
Landmark match
#234
clbarnes
closed
7 months ago
0
get_volume uses mesh IDs, not volume IDs
#233
clbarnes
opened
1 year ago
0
Deprecate get_annotation_graph for get_entity_graph
#232
clbarnes
closed
1 year ago
4
Paginate get_entity_graph response as it's very slow
#231
clbarnes
opened
1 year ago
1
Pymaid seems incompatible with numpy 1.24.0
#230
jialumaomao
closed
1 year ago
3
get_skids_by_name with empty list
#229
clbarnes
opened
1 year ago
0
Add get_skeleton_ids to api.rst
#228
clbarnes
closed
1 year ago
0
function for list_skeletons endpoint
#227
clbarnes
closed
1 year ago
1
Annotation graph fixes, logging normalisation
#226
clbarnes
closed
1 year ago
1
docs: update igraph installation instructions
#225
szhorvat
closed
1 year ago
2
Docs broken
#224
clbarnes
opened
1 year ago
0
Landmarks
#223
clbarnes
closed
1 year ago
0
Update versions in gha
#222
clbarnes
closed
1 year ago
0
Do not use regex for exact annotation name matches
#221
clbarnes
closed
1 year ago
1
Using regex for exact matches misbehaves for special characters
#220
clbarnes
closed
1 year ago
0
Leaked Semaphore Objects when running Navis.cut_skeleton
#219
thejordanrivers
opened
1 year ago
1
Unable to fetch data from Platynereis Dataset
#218
kareef928
opened
2 years ago
5
TypeError when trying to fetch connectors
#217
bdpedigo
closed
2 years ago
3
`heal_skeleton` replaced `heal_fragmented_neuron`.
#216
perlman
closed
2 years ago
1
requests.exceptions.ConnectionError:
#215
dadanhan
closed
2 years ago
11
navis.cable_overlap on axon/dendrite fragments - non-unique neuron ID problem?
#214
kuanawanda
closed
2 years ago
4
get_connectors raises AttributeError when there are no synapses of requested relation_type
#213
kuanawanda
closed
3 years ago
1
pymaid.connectivity.cable_overlap raises KeyError exception
#212
kuanawanda
closed
3 years ago
2
KeyError: 13 when using 'get_connectors_between'
#211
cytheria43
closed
3 years ago
7
ValueError: Cannot setitem on a Categorical with a new category, set the categories first
#210
pgibb96
closed
3 years ago
6
module 'pymaid' has no attribute 'split_axon_dendrite' (and others)
#209
eddie2612
closed
3 years ago
6
module 'pymaid' has no attribute 'Viewer'
#208
michaelsmclayton
closed
3 years ago
5
get_node_list in delete_nodes sometimes fails to get connector link IDs
#207
jasper-tms
closed
3 years ago
3
module 'pymaid' has no attribute 'CatmaidInstance'
#206
pgibb96
opened
3 years ago
31
Update master to 2.0.0
#205
schlegelp
closed
3 years ago
0
SOLVED: "Could not load the Qt platform plugin "xcb" in "" even though it was found"
#204
jasper-tms
opened
3 years ago
2
Test pymaid 0.2.0
#203
schlegelp
closed
3 years ago
5
Incorporate Jasper's upload changes
#202
schlegelp
closed
3 years ago
0
'DataFrame' object has no attribute 'ix' index
#201
SridharJagannathan
closed
3 years ago
2
Remove non ASCII characters
#200
nilsec
closed
3 years ago
1
Improvement to upload_neuron's handling of connectors and connector tags
#199
jasper-tms
closed
3 years ago
8
Enabling sets as arguments to pymaid functions
#198
jasper-tms
closed
3 years ago
1
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