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I've tried to download your corrected data via:
**wget http://complex.zesoi.fer.hr/data/downloads/HG002.experimentalUL.corrected.fasta.gz**
But it doesn't seem like work and i could not download the…
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The way the FASTA file is loaded in `precompute_alignments_mmseqs.py` is very fragile. https://github.com/aqlaboratory/openfold/blob/ef0c9face788001b1624b3b2dbfa951072841835/scripts/precompute_alignme…
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Hello
We have done a phased assembly using HiFi data and Improved Phased Assembly (IPA) on a polyploid plant. Then, we did a Omni-C (Dovetail) for the same plant and we got the its short read libra…
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(This was already mentioned in https://github.com/kblin/ncbi-acc-download/issues/13#issuecomment-531677362, but I think it is better to have a separate issue.)
`ncbi-acc-download --format fasta --r…
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Hello Brian,
I'm running a genome guided trinity slurm job in a HPC after indexing my reference genome and mapping my reads with STAR. I would very much appreciate if you could you give me some input…
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I have a workflow which uses kmc to count all kmers in an extremely large dataset of about 250,000 fasta files. The workflow was originally built with v3.2.1 of kmc, but stalled when I updates to v3.2…
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Hi,
I am trying to run the isocircPlot script and am getting an error with bedtools and I am not really sure what to do in this situation. Do you think it has to do with the version of bedtools or …
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Hello,
I have provided chep_pileup_to_array with a fasta file and a bam file with illumina reads aligned to said genome fasta file. It ran fine as per example in your README and produced chep_3D.txt.…
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I am extremely interested in using priors.
What is the format of this file?
fasta, amplicon style (for example, V4 region only)
or fasta full 16S read?
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Hi all, I have difficulty defining an output file for my relative abundance run, any hints please what am I missing here?
```
coverm genome --genome-fasta-extension fasta --genome-fasta-files *.f…