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herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).
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Downloading Data failure and QV calculation
#42
Yoon90
opened
6 days ago
0
location of scripts in singularity container
#41
JudithR
opened
1 week ago
1
How to reduce RAM usage of "herro inference"?
#40
shelkmike
opened
2 weeks ago
2
model training
#39
csuzhang
opened
2 weeks ago
0
Models inaccessible
#38
qhelleu
opened
2 weeks ago
0
CPU-only inference
#37
maickrau
opened
4 weeks ago
0
Core dumped at herro inference
#36
sivico26
opened
1 month ago
0
Poor assembly metrics with hifiasm v0.19.8
#35
chklopp
opened
1 month ago
0
HERRO's 10Kb input recommendation
#34
estolle
opened
1 month ago
0
Failed conda env create
#33
GuillaumeHolley
opened
1 month ago
3
Update README.md
#32
msikic
closed
1 month ago
0
Update README.md
#31
kkrizanovic
opened
1 month ago
0
CLR read model training
#30
chklopp
opened
1 month ago
1
hifiasm options
#29
chklopp
opened
1 month ago
1
Observation: Reads get split at certain intervals more often.
#28
bpanda-dev
opened
1 month ago
3
Out of bounds for 2-bit sequence decoding.
#27
jguhlin
opened
1 month ago
2
Installation issues during conda env create
#26
Krannich479
closed
1 month ago
5
Memory errors?
#25
mattloose
closed
1 month ago
3
`RuntimeError: CUDA error: an illegal memory access was encountered`
#24
AndreaGuarracino
closed
1 month ago
5
How about Ploidy?
#23
rfinkers
opened
2 months ago
2
batch.py syntax error
#22
evgenyleushkin
closed
2 months ago
5
Heterozygous SNP counts for HG002 sample
#21
hp2048
opened
2 months ago
0
Does it fit for 1kb to 2kb read length data
#20
arpit20328
opened
2 months ago
3
Update readme with -c option
#17
nkkarpov
opened
2 months ago
0
Query on Minimum GPU requirement and Performance on duplex reads
#16
bpanda-dev
opened
2 months ago
0
About read length filter. Will it be a problem if I include reads shoter than 10kb?
#15
ItokawaK
closed
2 months ago
2
herro inference error
#14
Mar10L
opened
3 months ago
1
split install instructions on README.md to sub-topics
#13
DininduSenanayake
opened
3 months ago
0
Checkpointing for minimap2 alignments
#12
claumer
opened
4 months ago
0
Error-correction step error
#11
qhelleu
closed
4 months ago
2
Bugfix
#10
dominikstanojevic
closed
4 months ago
0
herro's principle and phasing
#9
dcopetti
closed
4 months ago
2
Updated README
#8
dominikstanojevic
closed
5 months ago
0
Bugfix
#7
dominikstanojevic
closed
5 months ago
0
Loading into RAM only a part of the input
#6
nkkarpov
closed
2 months ago
2
Add Dockerfile
#5
jelber2
closed
5 months ago
1
LD_LIBRARY_PATH may not be well configured in Singurarity image
#4
ItokawaK
opened
5 months ago
6
Access to the models
#3
qhelleu
closed
5 months ago
5
Fix crash
#2
nkkarpov
closed
5 months ago
0
Feats
#1
dominikstanojevic
closed
1 year ago
0