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Hi, looking forward to using your tool, just an issue with getting it running. I had an issue with directories not being complete as posted by someone else the output/misc, though that was resolved.
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Hi Marius,
I got an error when running function wk.compute_initial_growth_rates(). I am not sure what caused it:
Here is what I run:
wk.compute_initial_growth_rates(organism="human", ke…
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System ubuntu20 gcc 9.3.0
Problem: running problem
Describe: compiling was successful, but error was reported when running to DSK program
error log
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I was wondering if you could clear something up for me. In the README documentation, there is a [section on kmer default sizes](https://github.com/GATB/gatb-core#kmer-default-sizes) which I am slightl…
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Hi,
I get the following error at the BESST part of the script, any ideas why?
(2018-05-30 06:24:22) Execution of 'python BESST/runBESST'. Command line:
/storage/raz/gatb-minia-pipeline/to…
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**Description**
I am using bactopia for the last week with a series of genomic data without any issue. With one particular set of data bactopia is crashing with the indication
```
Caused by:
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Hello minia group,
I wonder if it's possible to run scaffolding if I only have illumina pair end reads, without any mate pair reads?
It seems BESST needs mate pair reads, because "-orientation"…
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I am attempting to run wengan with an assembly generated from minia in the past (well, gatb-minia pipeline). I am running Wengan on a cluster with the Linux release (I will try building from source s…
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Hello!
I've been trying to run gatb-minia-pipeline and although it seems to be producing an assembly (a file called `*_final.contigs.fa), i've been getting the following error right at the end of t…
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Hi,
I tried to run an SH-assembly on public dataset SRR3191692 and got:
`Segmentation fault (core dumped)`
with no further output when calling `CQF-deNoise`.
I called it with the following param…