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I have a sorted bam and a bed file and tried to find reads in the bam file that overlap with entries in the bed file. I tried two ways:
1) intersectBed -abam sorted.bam -b sample.bed -f 1 > interse…
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- [x] `public_sequence_resource` should be a link instead, https://github.com/arvados/bh20-seq-resource/graphs/contributors
- [x] **Big Prominent link** Online Demo Link to https://graph-genome.githu…
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As a lab member I want to visualize archaic regions in a genome browser so that I can ?????
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(I reckon that's clearer and more consistent with the dialog box description "Filters can be used to show only the rows that meet specific criteria.")
HOME [tab] > Explore genomic data through the V…
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Potential ideas
- Clicking on some types of tracks produces a dialog box that has many subtracks underneath it. Motivated by ucsc which has many tracks, but on their genome browser page, the number…
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I tried to download all of the genomes using the "Contig accession" column in the supplementary table and these are the ones that were not recognized:
411479.31.con.0020
1351.557.con.0001
1280.10…
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The zoom in and out buttons in the control panel primarily work on the left subpanel. To recreate:
1. Go to https://proteinpaint.stjude.org/?appcard=hic and click on the 2 chr example.
2. Click on…
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Hello,
here are the steps to reproduce the problem:
Assembly hub URL: http://genome.ucsc.edu/cgi-bin/hgHubConnect?hgHub_do_redirect=on&hgHubConnect.remakeTrackHub=on&hgHub_do_firstDb=1&hubUrl=ht…
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https://www.patricbrc.org/view/Genome/272563.8#view_tab=browser&loc=NC_009089%3A2167251..2177830&highlight=NC_009089%3A2172531..2172545&tracks=refseqs%2CPATRICGenes%2CRefSeqGenes
This compare regio…
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A user wrote in asking about the allele numbers (AN) for this [variant](https://gnomad.broadinstitute.org/variant/3-10052405-G-A?dataset=gnomad_r4). I realized from their question that the non-UKB A…