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Hi,
I seem to be running into a couple of different types of errors when executing fanc compare on separate datasets (the command also takes many days to run its course and ends up generating the f…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back …
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- Create Azure Storage account for saving Cancer Genomics data
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Enhanced, improved and novel NMDC workflows to advance microbiome science
Similar to the entire field of genomics, all NMDC workflows (Appendix 15) are subject to an iterative
improvement process. To …
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Description of Plan A: https://github.com/orgs/va-big-data-genomics/projects/10/views/1?pane=issue&itemId=37294954.
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### Description of the bug
I really want to run this pipeline, however, I am facing several issues. First, with spades memory, I ran the assemblies out of the pipeline, and I tried to run the pipelin…
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Hello,
When running a job with "gcloud alpha genomics pipelines run", I have an output that is a couple different directories...
/mnt/data/output/A
/mnt/data/output/B
Is there any way to copy …
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Hello,
We are analyzing Spatial Transcriptomics data from Visium 10X Genomics data, and we have multiple capture areas. We want to enhance our whole dataset with BayesSpace, but as it takes spatial…
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Hi!
I'd like to learn Glow but I'm having trouble running the demo-notebook (https://glow.readthedocs.io/en/latest/getting-started.html#demo-notebook) using Databricks Community Edition. Is there per…
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All the data for the R for genomics workshop is on a figshare instance with nice instructions.
https://figshare.com/articles/Data_Carpentry_Genomics_beta_2_0/7726454
From that we only need `combin…