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MH.1+C10183T+C25413T+A178T+C5770T+C3587T(Orf1a:H1108Y)+C21815T(S:P85S)
GISAID query: C21815T, C3587T, C25413T
No. of seqs: 19(France 1 Israel 12 China 1 USA 5(2 from Netherlands))
First: EPI_IS…
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KP.3.1.1+G25617T(Orf3a:K75N)+G17122T(Orf1a:A1219S)+G6352T, C21789T(Orf1a:K2029N,S:T76I)
GISAID qurry: G6352T,C21789T, G25617T
No. of seqs: 6(USA, 5 from Italy)
First: EPI_ISL_19285214, USA, 202…
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KP.3.1.1+T15567C, A23723G(S:S721G)
GISAID query: T15567C, A23723G, C12616T
No. of seqs: 6(Denmark 3 USA 2 (from Germany), Sweden 1)
First: EPI_ISL_19299670, 2024-7-8, Denmark
Latest: EPI_ISL_1…
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LB.1.7.2> C22185T(S:T208M)
Query: C22185T, T23600C
Earliest sequence: 06-16 Colorado, USA EPI_ISL_19217764
Latest sequence: 08-15 Colorado, USA EPI_ISL_19376434
Regions detected: Colorado 9(1 no…
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KP.2.3(with 31del)+C28714T+G22104T(S:G181V)
GISAID query: G22104T, G25593T, C28714T
No. of seqs: 7(Canada 1 USA 6(1 from France 1 from Portugal)
Worth noticing the 6 USA seqs are from 6 differe…
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KP.3.1.1+C5826T(Orf1a:T1854I)+C8247T, G22104T(Orf1a:S2661F, S:G181V)
GISAID query: C5826T, C8247T, G22104T
No. of seqs: 16(France 1 Germany 2 Luxembourg 2 Spain 1 Sweden 1 USA 8(2 from Portugal))
…
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![image](https://github.com/user-attachments/assets/4cea9094-6dac-46b4-914a-e4ce089bdeac)
tree: https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_39561_fbb950.json?f_userOr…
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JN.1.51.1+A24727T+G22343C(S:G261R)
GISAID query: G22343C,A24727T
No. of seqs: 8(China 6(Hubei, Heilongjiang), USA 1(from China) Singapore 1)
First: EPI_ISL_19268245, Singapore, 2024-7-4
Latest…
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When I download a metadata file there is no AA Substitutions column... I'm not sure why we have different columns. It seems maybe different users are getting different results from GISAID? #26
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## Description
Deprecate Pandas in cg and replace it.
Pandas is currently used in Fluffy and gisaid.
## Suggested solution
remove pandas imports and replace it
## This can be closed w…