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Hi, I came across your paper
Chen, Z., He, Z., Chu, B. B., Gu, J., Morrison, T., Sabatti, C., & Candès, E. (2024). Controlled Variable Selection from Summary Statistics Only? A Solution via GhostKn…
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Hi, there:
Please see my screenshot attached below, this munge_sumstats.py command is still running after 10 hours. Then I had to kill it. Can you please let me know what I did wrong.
Since m…
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I have run my GWAS summary statistics through fizi --munge and fizi --impute without issue. However, when I bring them forward to FUSION for TWAS, I am getting the following error:
```
Error in su…
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Hi,
Issue: I am running DENTIST_1.2.0.0 (pre-compiled) on GWAS summary statistics for height (2018 meta-analysis if you want to reproduce, with 1000G EUR samples as an LD reference). In general, ev…
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Hello, I tried to use the LDSC for Partitioned Heritability from Continuous Annotations, but we got the following error information. Can you help to check what's the reason for this kind of error? Tha…
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Hi, sorry for so many question,
but I am really interested in your method.
I wanted to double check with you the intercept you refer to in the paper and make sure my interpretation is correct.
belo…
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Hello,
The script for running LD calculations is very specific for 1000G haplotype data. However, recently published reports (PMID: 28942963) show that using small external reference panels for sum…
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## Background
The file [PRS_data.txt](https://github.com/FINNGEN/CS-PRS-pipeline/blob/master/data/PRS_data.txt) needed as
input to the wdl pipeline contains examples with GWAS summary statistics o…
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Could you please help with the following error message.
I am attempting to execute COLOC on two GWAS summary statistics. However, when I try to run COLOC using the code provided below, an error is…
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Hi,
Thank you for developing this interesting method for TWAS analysis of multiple correlated outcomes. I looked at the example provided based on simulation data. I have GWAS summary data (also have…