gkichaev PAINTOR_V3.0 issues

gkichaev / PAINTOR_V3.0

Fast, integrative fine mapping with functional data

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issues

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The posterior probabilities of all SNPs in the result files are 1

#69 lanshanxuying opened 11 months ago
0
Error: Infinite/non-numeric value in LD matrix detected!!

#68 kekeandgougou opened 11 months ago
0
error: call of overloaded ‘isnan(double&)’ is ambiguous

#67 shafiqnoa opened 1 year ago
1
Species issues

#66 wangmengdie-a opened 1 year ago
1
tophit's posterior probability is 0

#65 akhilpampana opened 1 year ago
5
What is the licence of paintor ?

#64 sdjebali opened 1 year ago
0
Error with CANVIS

#63 jinghuazhao closed 1 year ago
7
Script to split GWAS file into loci ?

#62 sdjebali opened 1 year ago
0
MemoryError Problem: 2a. Computing 1000 genomes LD

#61 rootze opened 1 year ago
0
Have Paintor pipeline in nf-core ?

#60 sdjebali opened 1 year ago
0
Installation issues

#59 bschilder closed 1 year ago
1
Error when generating ld matrix using CalcLD_1KG_VCF.py

#58 akhilpampana opened 2 years ago
0
Running paintor has no output

#57 Linshiqi-Git opened 2 years ago
0
Z-score sign changes after running CalcLD_1KG_VCF.py

#56 irisbroce opened 2 years ago
0
Compilation error in eigen on an arm64 MacBook Air

#55 DanielEWeeks opened 3 years ago
1
Abort trap:6

#54 QingLi1994 opened 3 years ago
6
Direct URL for Functional_Annotations.tar.gz ?

#53 APLevine opened 3 years ago
0
Please provide a licence

#52 kalylian opened 3 years ago
0
Warning! The estimated N*h2_g,local for locus FOXP2 is: 4067.61

#51 preetilk closed 3 years ago
0
LD matrix preparation for PAINTORv3

#50 CFB2018 opened 4 years ago
2
Error using install.sh with some GCC versions

#49 wwarriner opened 4 years ago
1
PAINTOR performance

#48 cgrace1978 opened 4 years ago
0
Posterior Probabilities > 0.99 from enumerate function

#47 GenesRTough opened 4 years ago
0
Truncated annotations file: .E094-H3K9me3.narrowPeak.Gastric.P486F3

#46 andronekomimi opened 4 years ago
1
please tag releases

#45 fizwit opened 4 years ago
0
fix bug of defaul --bp_head

#44 JiaShun-Xiao closed 4 years ago
1
Segmentation fault (core dumped)

#43 rabbitdsy opened 4 years ago
1
Quick way to extend LD calculation to other reference panels

#42 pwh124 opened 5 years ago
1
terminate called after throwing an instance of 'std::invalid_argument' what(): stod

#41 YaoXueming opened 5 years ago
2
eqtl annotation files

#40 ghost opened 5 years ago
0
CANVIS script won't run

#39 bogdanknez opened 5 years ago
1
AnnotateLocus.py doesn't recognize input

#38 bogdanknez closed 5 years ago
1
Comparing -enumerate and -mcmc runs

#37 ppericard opened 5 years ago
0
Annotation correlation

#36 pwh124 opened 5 years ago
2
CalcLD_1KG_VCF.py Error

#35 Ingezz opened 5 years ago
1
annotation resource for hg38

#34 carolhanfei opened 5 years ago
0
check that there is one LD matrix per trait/population

#33 Helkafen opened 5 years ago
0
Downloading problems for functional annotations data

#32 chenxiaofeng2018 opened 5 years ago
1
Not significant SNP in GWAS has probability more that 0.99 in PAINTOR

#31 gnovikov opened 5 years ago
3
MCMC documentation

#30 Helkafen opened 5 years ago
0
can't find the annotation library

#29 zhangqingah opened 5 years ago
0
AnnotateLocus.py issues

#28 leaskimo opened 5 years ago
3
check that there is at least one locus to process

#27 Helkafen opened 5 years ago
0
decrease time complexity of vcf loading

#26 Helkafen opened 5 years ago
0
Error from CalcLD_1KG_VCF.py for SNPs with MAF=0?

#25 karaesmen opened 6 years ago
0
Error installing (call of overloaded isinf is ambiguous)

#24 billgreenwald opened 6 years ago
2
The number of causals when running MCMC

#23 variani closed 6 years ago
3
Name of annotations

#22 jfertaj closed 6 years ago
2
Z-score error header still happening

#21 jfertaj closed 6 years ago
0
Error with Z-score header

#20 jfertaj closed 6 years ago
4