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Hi:
I found `hicDifferentialTAD` is quite useful to get differential interactions domains from two matrix. However, I am wondering how to filter the results. The default outputted table is quite conf…
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Hi,
Thanks for mgikit, really useful tool!
I've installed mgikit-multiqc without any issue as far as I can tell (substituting python3 for python because of a "Command 'python' not found error wi…
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I am trying to plot TADs using the HiCPlotTADs tool , but I keep receiving the same error.
```
INFO:pygenometracks.tracksClass:plotting 1. [x-axis]
INFO:pygenometracks.tracksClass:plotting 2. [hic …
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- HiCExplorer version == 3.7.2 (installed using conda)
- Python version == 3.9.13
Hi there,
I'm observing a weird behavior of the HicConvertFormat function, when I'm using a 2d-text bed file as i…
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Hi
When I used this tool, I got an error as below. How can I fix it ?
Thanks
Hub-hub contact for bin_id:30767 scaffold: tig00000201_arrow_pilon/5_0 degree: 8
with bin_id: 30766 scaffold: t…
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Dear @ay-lab
I updated to the latest version, it gives me an error when using following command,
command,
`selfish -f1 WT_KR_corrected_matrix.cool -f2 8WM_KR_corrected_matrix.cool -nb -o WT_8…
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Hi,
I'm using the latest version of HiCExplorer, and I have had used version 3.6.* last year. The eigenvalues produced are completly different. I have read the code and commit info saying 3.7.2 is …
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Hi, I have an error while trying to run the hic pipeline on the test data with the conda environment.
Looks like a python module is missing.
Thanks for your help
```
$ ./nextflow run nf-cor…
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Saving asymmetric matrices with hicMatrix.save(...) does not work when pSymmetric is set to False. Instead, an exception is thrown.
For the following example, hicexplorer 3.3.1 and 1000kb HMEC matr…
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Hi there,
Could anyone shed some light on any potential issues that might result in 'assemble' crashing with the following error stack:
DEBUG:HiCAssembler:iteration: 0 N50: 8,770,000
DEBUG:HiCA…