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Hi!
Thanks for the great plugin on the qiime2 platform. I've heard that it is now possible to run picrust2 for ITS data, but was wondering how I can do this in qiime2 using the qiime picrust2 full-…
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**Describe the bug**
Sometimes it's not possible to set a reasonable default for a tool parameter in the tool XML but users must set a value.
This is currently not possible at least for numeric p…
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When `funannotate annotate` attempts to parse the `interproscan.xml` file it throws the error:
`Error parsing XML GO terms: None is not a valid term`
I checked the interproscan.xml file and it …
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Dear developer,
**What do you want to know?**
When will the RepeatMasker or famdb.py update for the latest version of Dfam?
**Helpful context**
I found that Dfam has just updated the Dfam.h5 v…
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I built the latest version of InterProScan into a singularity container, and ran it on our HPC clusters with local mode. The whole node has 128 cores. Below is the my command:
singularity exec int…
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Hi there,
I ran hmmsearch and within the results I have duplicated IDs in the results. The duplicated IDs is caused because the model detected different sections of a sequence (query). Because of thi…
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Hello @cryptogenomicon, big fan of `hmmer`, especially `jackhmmer`. Recently, while searching for some multi-domain protein homologs against standard databases, we have seen the following outcome from…
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I am trying to start using Bio.SearchIO.InterproscanIO, but got stuck at the very beginning. How to input/read/parse the output of Interproscan into Python?
https://biopython.readthedocs.io/en/late…
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Hi, I pulled the code from the branch `h3-avx`.
When I ran `./configure` at the hmmer dir, an error occurred
```
config.status: error: cannot find input file: `src/impl_avx/Makefile.in'
```
And I…
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Hello,
I have an edge case issue where HMMER fails to recognize valid hits in the flanking regions of a HMM profile. I've tried tweaking parameters to no avail. (Or is there something I've overlook…