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Hi @cmdcolin this is great work! Two questions:
(1) is it possible for the user to interactively add/update highlights? (as in apollo)
(2) is it possible to display a peak model on top of the da…
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- JBrowse version: 1.16.6
In previous versions of jbrowse (up to 1.16.5 as far as i can tell), running flatfile-to-json.pl with the --bed and --subfeatureClasses options would give you a glyph with…
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on selecting "Quit" from the jbrowse desktop mac app, i sometime see a crash.
tested with v2.10.2
not sure if it's just my machine or not, and it seems like it is not be every time...
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Users would like to be able to extract sequence information flanking a SNP of interest. This is useful for designing KASP markers.
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Currently assumes only one best alignment per genome position. If there are multiple, then they are plotted over each other. MAF files from UCSC pipeline work well, others including Ensembl can outpu…
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How does Apollo load RNAseq reads? And why does their detailed view change so much depending on the zoom level?
This is the instance on staging, centered at Group1.33:409181..437190 (28.01 Kb):
# !…
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Set order explicitly.
Configure sorting callback.
Set exact content explicitly.
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![2023-10-27 - 15-52-34 - PlasmoDB -- JBrowse](https://github.com/elsiklab/multibigwig/assets/39096257/dabb1426-7b00-4e43-812b-6615d7c6b9cb)
The image above shows individual XY tracks and a multi…
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Add options to show:
- [x] 6-frame translation with start and stop codons highlighted
- [ ] canonical splice sites
- [ ] GC content when zoomed out