-
Dear Professor,
I want to use the core function `psf_generator.py` to generate a detection PSF of a light-sheet microscopy. I'm a little confused about the choice of refractive index n0 in this line …
-
-
I'm making a csv viewer program using a webview called lightsheet_rust(https://github.com/yiunsr/lightsheet_rust). I am using slickgrid in this program. The program aims to read very large csv files. …
-
From Joel:
> The other 4 have normal bit depth, but I can't flip them into 'Volume' display mode in the Portal. For example see https://portal.hubmapconsortium.org/browse/dataset/abc2742ced21e7b42e8…
-
Discussing at SPAOM2019, two groups wanted to use it for lightsheet microscope. In here, the mosaic window does not make a lot of sense, so maybe we could make it optional and have alternative windows…
-
Currently, https://portal.hubmapconsortium.org/browse/dataset/d76ee69cff161f4605f9d65721f41f5d fails with a 500. In the logs:
```
2022-06-15T17:13:06.843438348Z [2022-06-15 17:13:06,834] ERROR in ap…
-
Hi all,
We are interested in using PyimarisWriter to compress terabyte-scale lightsheet datasets. I was able to compile `ImarisWriter` and all its dependencies on CentOS 7 using `cmake 3.22.1` a…
-
Hi @StephanPreibisch,
I am trying to do an AffineExport with spark:
```bash
~/spark-janelia/flintstone.sh 4 \
/groups/spruston/home/moharb/BigStitcher-Spark/target/BigStitcher-Spark-0.0.2-SNAPS…
-
Hello.
I am trying to deconvolve a 101x2160x2560 (DxWxH) image with a 3x9x9 (DxWxH) PSF. I have tf-gpu 1.14.0 installed, and have 11GB card.
```
import tensorflow as tf
from flowdec import data…
-
New code not needed. Nils is interested in whether assays typically have single or multiple allowed analytes -- This feeds into UI design for assays.
- See also https://github.com/hubmapconsortium/po…