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Hi, is your custom dataset still available? I'd like to compare my model.
Best regards,
Michael
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https://proteomics.cancer.gov/news_and_announcements/human-melanoma-proteome-atlas-proteogenomic-researchers-map-protein?cid=eb_govdel
- [ ] [create an issue on datahub](https://github.com/cBioPort…
jjgao updated
2 years ago
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I followed the TCGAWorkflow to run GAIA using TCGA Malignant melanoma (SKCM) level 3 segment data. According to [GAIA load_cnv documentation](https://www.rdocumentation.org/packages/gaia/versions/2.16…
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Updated action items:
Before taking further action on this, we should get in touch with Sharon Plon and her team to inform her of these potential changes. Note to self - see email: Re: NCI Thesauru…
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We have to design the spectral clustering benchmark, the following preconditions are needed for the test:
- [x] A single machine, with local space for stable tests.
- [ ] Different sizes of data…
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Hello! Thanks for developing this tool. I've been exploring TCR data with it successfully. I would like to extend it to BCR data. I found the organism option human_ig, but after running conga.tcrdist…
ghost updated
3 years ago
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Universal PTV with 90% cutoffs:
Cutoffs are based on all patients. There are 2 groups: 90% below and 90% above.
Female low PTV burden: green
Female high PTV burden: purple
Male low PTV burden: bl…
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Dear immunarch team,
thank you for the nice R package.
I recognized that there is a new release of MiXCR (4.1) with severeal changes and where the default exported clonotypes format does not see…
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### Overview
This is to report on the comparisons that were made between moses and asmoses and the results that were found based on issue #69.
### Benchmark
For comparison purposes we used demo-…
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Suggestions from ClinGen somatic working group:
- NCIT
- OncoTree
- SNOMED