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Hi @ArnaudBelcour,
I have been having some issues running m2m_analysis powergraph. Using genome-scale metabolic models for almost 3300 gut microbes, I am trying to visualize the minimal communities…
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Hello,
I have installed Pathway Tools v25.5 and Metage2Metabo v1.5.0 both locally and with docker. In both cases when I run either `m2m test` or `m2m workflow`, I am getting the following output wi…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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I'm trying to create metabolic reconstructions using gapseq, but I'd like to use custom annotations.
1. Would it be possible to include our own annotations? I plan on using a variety of reference …
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Dears,
I tried to correct a model using raven, but when I tried to export the model (`exportModel(model)`) the next software doesn't work. When I said next software it could be cobrapy, memote or car…
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I used gapseq doall on ALLmed.csv to create a metabolic reconstruction of a bacteria, but the resulting biomass reaction produces ATP (cpd00067[c0]), which must be a mistake. The biomass reaction also…
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### Description of the issue:
I am following the `tutorial5` for the reconstruction of a metabolic model and having a problem when I need to `printFluxes`
#### Reproducing this issue:
```matlab
…
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### Description of the issue:
Hi, this is the first time using RAVEN 2.0, I have followed the installation steps so far, the latest step covered is installation of guribo solver, run the command se…
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I have one few problems while using RAVENTOOLBOX. I have installed MATLAB trial version R2021a and RAVEN Version 2.5.0 and branch master and getmodel homology ( I have tried both). Now I able to run t…
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Hi there! I have few process questions:
1. In your paper you have several sets of metabolic targets, did you run the workflow separately for each list of targets?
2. Some of the genome annotations …