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All the terms listed below have been approved for inclusion in the new "Food" package to be included in v6. I am adding this list here to enable a history of the new terms to be included in the repo a…
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```
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FAIL: test_indexing (integration_test.IndexingIntegrationTest) [manifest] (catalog='it2ebi', format='terra.pfb', attempts…
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I am trying to get the output file "Alleles_frequency_table_around_sgRNA_GTTTTCTCGCACTTAAGCTC.txt" to only show the protospacer and PAM sequence in the Aligned_Sequence and Reference_Sequence columns.…
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**Is your feature request related to a problem? Please describe.**
None of the projects pages have been imported yet, i.e. all the links on this [page](https://gensc.org/projects/)
**Describe the…
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While running this command (breseq 0.33.1):
> gdtools ANNOTATE --output variants.json --reference ecoli-snippet.gb --format JSON --add-html-fields --preserve-evidence positives.gd predicted.gd
…
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Since cg version 13.3.0 it is possible to store a completed microSALT analysis in Housekeeper with the command `cg workflow microsalt store analysis` and providing it with a path to a deliverables fil…
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Hi,
First of all, thanks a lot for this super cool pipeline!
We have isolated colonies from environment and we sequenced them. We never cultivated them. Is it possible to compare their metabolic n…
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Do you need to create databases or is there a better option?
I created a database for copepods:
```
makeblastdb -in ../blastpacope/genomas_copepods/ncbi_dataset/data/db_all_copepods.fna -dbtype…
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I am seeing a segmentation fault when subtracting mutations with gdtools. No problems were found in the files when checked with gdtools VALIDATE and normalizing the files with gdtools NORMALIZE did no…
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**Cron $CRONIC ${PRODUCTION_HOME}/servers/resources/hasta.scilifelab.se/crontabs/microsalt-start.sh >> ${LOG_BASE}/microsalt.analysis.log 2> >(tee -a ${LOG_BASE}/microsalt.analysis.log >&2)**
Cron…