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Hi,
Do you expect that the microRNAseq analysis capability provided by bcbio would make sense for analysis of microRNAseq data of non model organisms?
I am trying to see if I can process the Ca…
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Hello,
During our discussion with Ruth and Marcio yesterday we came up with the following proposal:
**Transcription** by the different polymerases always takes place via the same process, re…
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Why do we have a double entry for MIR21? See also here:
http://www.cbioportal.org/results/oncoprint?Action=Submit&RPPA_SCORE_THRESHOLD=2.0&Z_SCORE_THRESHOLD=2.0&cancer_study_list=acbc_mskcc_2015%2C…
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GO:0005487 nucleocytoplasmic transporter activity
is a
"molecular carrier activity"
not "protein transporter activity"
see
https://github.com/geneontology/go-ontology/issues/14331
https…
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When I was testing the installment and running with the test dataset,
FEELnc_codpot.pl -i candidate_lncRNA.gtf -a annotation_chr38.gtf -b transcript_biotype=protein_coding -g genome_chr38.fa --mode=s…
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$ micro_razers -sL 16 /tmp/query.fasta /tmp/db.fasta
Segmentation fault (core dumped)
$ gdb /usr/bin/micro_razers /var/dumps/core.micro_razers.20226
GNU gdb (Gentoo 7.9 vanilla) 7.9
Copyright (C) 2…
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Due to the limits of the previous version of the domain tags, acronyms had to be included within the primary label of the tag. This isn't necessary with these ontologies and the acronyms and labels ca…
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i'm try to use (The SearchIO object model) to search for unknown sequence using biopython code example in tutorial, it gives me error.
I am reporting a problem with Biopython version, Python versi…
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It can be very difficult to find a sequence. For example someone tried to use `rat microRNA 21 AND rna_type:"miRNA"` to find rat microRNA 21 at the recent meeting. This was pretty tricky and I had to …
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I want to run a target search using a program like https://github.com/carringtonlab/TargetFinder
to find putative target genes. How can I get miRNA sequences? I see in the results file
the MajorRNA…