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I'd like to create a tracking-issue for the branch I'm working on to add a partial-order aligner to the repetoire of alignment tools in rust-bio:
https://github.com/rust-bio/rust-bio/tree/partial-ord…
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For the `nw` MachSuite app (Needleman–Wunsch, "a dynamic programming algorithm for optimal sequence alignment"), the input data consists of characters. (See [here][nw-data].) Would it be worth adding …
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Researcher reports a discrepancy in code comments (two occasions) vs. what is actually implemented in the code. The concern is that pairHMM actually performs global alignment (Durbin Figure 4.2) but t…
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I would expect the snippet below to print more alignments, that have residue pairs ('Q', 'N') and ('N', 'E') prepended to the aligned region (see output from my own implementation). BLOSUM62 scores fo…
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The tests take ~40 minutes via Travis, which is running through all of the notebooks. Once we hit 50 minutes, Travis will abort the tests. Most of the cells run instantly, or with little delay, but so…
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Obviously not the most pressing concern for this project, but we should come up with a name for this. This includes properly naming our "meta Needleman-Wunsch" algorithm.
It's something to think abo…
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flake8 testing of https://github.com/lzfelix/pyStrings on Python 3.6.3
$ __flake8 . --count --select=E901,E999,F821,F822,F823 --show-source --statistics__
```
./levenshtein.py:302:64: E999 Syntax…
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Moin,
ich versuch gerade das ganze zu integrieren und scheitere an deinem loader voodoo mit dem du das alignment.html füllst.
ich brauche eine simple strategie/script/whatever, welches mir für ein…
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This isn't a bug report... more just a question. Hope you don't mind. :)
I'm the author of [ShapeShifter](https://github.com/alexjlockwood/ShapeShifter), an SVG icon animation app. You can see an e…
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Hey guys,
I have a feature request: would it be possible to wage based on the qwerty keys distance from each other? This would be super useful to detect typosquatting.