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Hi,
I have been meaning to try this tool for some time now. We do a lot of single-nuclei RNA-seq, as a result we end up capturing lot of reads from the pre-mrna . In order to deal with that , 1…
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@metavibor @constantinpape @imagirom
I am opening this issue to collect and discuss ideas about background subtraction.
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Dear Cellpose team, thanks for your great tool.
We love the quality of segmentation we obtain by using `Cellpose`. Currently, we are trying to figure out whether we can increase throughput to satur…
VarIr updated
4 months ago
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@zachmullen @danlamanna
[worker.format.converter_path](https://github.com/girder/girder_worker/blob/master/girder_worker/format/__init__.py#L95-L113) raises NetworkXNoPath but does not specify sourc…
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Hi, I am testing out ilastik for nuclei segmentation and it seems to work pretty well.
however, when I output my prediction maps and convert to a certain bit type (i.e., 16-bit unsigned) I am havi…
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Hi everyone!
I just wanted to share a personal good news : I recently published a paper in Nature Scientific Reports that uses 3D StarDist https://rdcu.be/cEGnl.
I wanted to share this with the …
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If the user calculates Max Intensity Projection on every channel for every FOV, along with maybe some segmentation results, what would be the best way to store them in the new version of zarr store?
…
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Hello,
First of all, I'd like to thank you for the great work.
I'm highly interested in multimodality and information contained across more than one channel. In that spirit, I wanted to use the…
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I have Trainable_Segmentation-Trainable_Segmentation-3.2.12.jar in /usr/share/imagej/plugins, where also other installed plugins (jars) are and are working, ie. "Volume Viewer" and "3d Viewer"
It …
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Hi @royerloic ,
thanks again for paving this path. I played a bit with your code and found [this place](https://github.com/royerlab/napari-chatgpt/blob/64788b3518071aeb8577e99c8cacc18e3c49eea2/src/…