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Initiated at https://bugsigdb.org/Study_540. Note - there are no guarantees that information already entered here (such as study design) is correct, so please proceed as you would for a new study with…
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Hi Chi,
a few weeks ago with this library the differences among groups by beta diversity could be calculated with paired PERMANOVA like this:
t1
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ERROR: Failed building wheel for scikit-bio
Running setup.py clean for scikit-bio
Successfully built sourcetracker
Failed to build biom-format scikit-bio
ERROR: Could not build wheels for biom…
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Hi there,
I am trying to compute a PERMANOVA using Adonis2 with 110 factors. Essentially I want to find out the R2 for each factor and see how much it contributes to overall variation in microbiota…
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I ran revdep_check() on a new version (1.0-8) of my package deldir and at the end (?) got the following error message:
Error in desc$get_field("BugReports", default = character()) :
attempt t…
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[MehrbodEstaki](https://twitter.com/MehrbodEstaki) correctly pointed out in his [tweet](https://twitter.com/MehrbodEstaki/status/1537933955248205824): "PSA: if you're using vegan's adonis for PERMANOV…
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Hello everyone,
When performing `netAnalyze()` using `clustMethod="hierachical"` is there a way to statistically validate the cluster subdivision within the network, such as a correspondent of perman…
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Hi I'm trying to perform a PERMANOVA on bray curtis distance matrix. I was following the M. Berry tutorial on phyloseq ( http://deneflab.github.io/MicrobeMiseq/demos/mothur_2_phyloseq.html ) but i fou…
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In the following example, `x` and `xm` are identical, except that `x` is `Vector{Float64}` and `xm` is `Vector{Union{Missing, Float64}}`. I remember Makie used to have a similar problem, where the uni…
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Currently, I am working with a dataset of gut microbiota from an experiment on pigs tested with three treatments (red meat, dss, and read meat+dss) against control group.
The experiment was done in t…