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### Description
**Recombinant between**: BA.2 & BA.1*
**Earliest sequence**: 2022/2/25 (Spain-Balearic Islands)
**Most recent sequence**: 2022/3/11 (Spain-Balearic Islands)
**Countries circulating…
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@OmkarSaMo I think we should define the scope of the workflow (at least for the first version/release). This will help us to focus on delivering a stable release.
I think this tagline you wrote is …
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Dear faylward, I recently tried to reconstruct NCLDV bins from my metagenomics.
I mainly refer to methods in your article "Dynamic genome evolution and complex virocell metabolism of globally-distri…
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**New lineage proposal:** 1,887 BA.2.9 sequences with Spike_ins213GRG + Spike_V213S from Denmark (as of April 23, 2022)
**by (alphabetical order):** Andreas Bergthaler; Fabian Amman; Lukas Endler…
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@blasid and @RustyGray have requested a visualizing of the effects of space and phylo in the dual model as a scatterplot with confidence intervals. I've made a very first stab at this in [this script]…
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I've noticed that PAPRICA sometimes drops OTUs from the edge_data file, most commonly in the Acidobacteria phylum. The OTUs are included in the placements file, but their subtree is designated as "phy…
cwatt updated
2 years ago
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Short read placement may fail at placing sequences in the right place to resolve taxonomy. To test the accuracy of this method, we could place test sequences that have been already (taxonomically) cla…
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There are a large number of sequences in GISAID that GISAID tags with Omicron lineage and a Pango lineage such as BA.1 / BA.1.1 but which have collection and submission dates predating the Omicron dis…
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Your method have shown really interesting results, but in order to improve the quality of results and conclusions, I would like to ask you a couple of questions:
1) Your software uses some precalcu…
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Hello, I'm tryting to run epa-ng with a newick tree generated with ETE3 (previously resolving the polytomies) and I recieve this error:
terminate called after throwing an instance of 'std::runtime…