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Hi!
Would it be possible to add a line in the beginning of the prokka .txt file that says it belongs to prokka to make it easily identifiable when parsing a large number of files? Eg. "prokka versi…
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Hi all,
Without getting any help with the previous problem, trying my luck on another problem that getting on the postinstall process:
I'm trying to get a successful run of the run_pipeline_test.sh …
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Hi Deyvid,
I am installing MARVEL but upon the step of downloading the models, I received this error:
```
Error: File models/all_vogs_hmm_profiles_feb2018.hmm does not appear to be in a recog…
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`prokka --kingdom mito` sets the genetic code to metazoa mt (5) and enables the metazoan mitochondrial tRNA mode of Aragron `aragorn -mt`. Is `-kingdom mito` intended specifically for metazoa, or shou…
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Hi,
I am trying to run Piggy for a couple of closely related bacterial genomes but the analysis fails during creation of the cluster files with “Cannot open output file: piggy/cluster_intergenic_fil…
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Argument "1.7.8" isn't numeric in numeric lt (>> Bacteria
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Hi. I used annotate_bins module to annotate reassembled bins. It went wrong. My metaWRAP version is 1.2.1.
Details are as follows:
```bash
(metawrap) root@wea2f9c22-bf1b-4b67-bd81-9dbfc0a7e35c-5…
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Prokka (1.14.5) provides couple of pre-compiled binaries:
```
[vsc43020@gligar07 ~]$ ls -lR /apps/gent/RHEL8/skylake-ib/software/prokka/1.14.5-gompi-2020b/binaries
/apps/gent/RHEL8/skylake-ib/softw…
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It appears that roary will use the real file names when running on softlinked files (that is, linked with ln -s). I frequently make pipelines where I have unique sample directories, but where file nam…
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Hi QiaoLiang,
Thanks for the program. Can VFM run from certain checkpoints? VFM stopped as it reaches the maximum time limit I can have on the HPC. I am wondering if VFM can run based on the hmm/pr…