harry-thorpe piggy issues

harry-thorpe / piggy

Pipeline for analysing intergenic regions in bacteria

GNU General Public License v3.0

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issues

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Faceting variables must have at least one value.

#30 Mewgia opened 7 months ago
0
FATAL: Argument 1 ("-db") is not recognized or is improperly formed

#29 jhcuarta opened 1 year ago
0
How the core IGR alignment？

#28 liweicheng0011 opened 1 year ago
0
How to run Roary so I can use its output as input for Piggy?

#27 212Wyll opened 4 years ago
0
failed to create IGR cluster files

#26 Bre-Na opened 4 years ago
4
Consider Andrew Page's pull request

#25 tseemann opened 4 years ago
0
Delete `piggy_old` from repo

#24 tseemann closed 4 years ago
1
Make a new release?

#23 tseemann closed 4 years ago
1
failed to produce IGR presence absence matrix

#22 nwheeler443 closed 4 years ago
5
failed to align IGR cluster files

#21 asaksager closed 5 years ago
13
pan_genome_reference.fa

#20 samlipworth closed 6 years ago
2
break of "IGR_presence_absence.csv" after 1334 columns

#19 theInnuendoProject closed 5 years ago
1
exclusion of IGRs < 30 bp

#18 maesaar closed 6 years ago
5
Roary -s option in publication

#17 maesaar closed 7 years ago
1
Getting a lower number of "core" IGRs in E. coli genomes

#16 mgalardini closed 5 years ago
11
GFF files not produced by prokka might not be handled properly

#15 mgalardini closed 7 years ago
2
More documentation needed for IGR_presence_absence file

#14 mgalardini closed 7 years ago
2
Add Dockerfile

#13 andrewjpage opened 7 years ago
2
Unrecognized escape \R

#12 EricDeveaud closed 7 years ago
2
out_dir should be created just before run

#11 EricDeveaud closed 7 years ago
1
parallel may breaks output

#10 EricDeveaud closed 5 years ago
1
while(readdir) not consistent amon perl versions

#9 EricDeveaud closed 7 years ago
2
Large numbers of temporary files created

#8 johnlees closed 4 years ago
6
please provide a tagged release

#7 EricDeveaud closed 7 years ago
1
Using 'getopt' in your master shell script

#6 tseemann closed 5 years ago
1
Redirect stderr to a log file

#5 tseemann opened 7 years ago
0
Fix "R" shebang line

#4 tseemann closed 4 years ago
2
Fix shebang line (Issue #1)

#3 tseemann closed 7 years ago
0
Add a -c option to check all binaries are installed

#2 tseemann opened 7 years ago
0
Update perl shebang line

#1 tseemann closed 5 years ago
0