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1. **Lab Name**: **Biochemistry Virtual Lab I**
2. **List of Experiments and Repositories**:
Isoelectric Precipitation of Proteins: Casein from Milk
https://github.com/virtual-labs/exp-casei…
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I'm trying to use [HuggingFace's ESMFold](https://huggingface.co/facebook/esmfold_v1) to predict 3D protein structures from the protein sequence. I've got a PDB output that loads just fine on the [RCS…
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Considering the more and more protein structures deposited in PDB, do I need to upgrede my AlphaFold database? and how to?
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I'm trying to cluster a set of ~500 conformations of the same protein but no matter what I try I only get 1 cluster.
Do I need to do something to the set of structures before clustering them?
I'…
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Hi all,
First of all, I apologize if this is not the proper place to ask usage questions.
Now, to the questions:
1. I have several structurally similar proteins (wild-types) and I am interest…
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http://www.wwpdb.org/download/downloads
> Since 1971, the Protein Data Bank archive (PDB) has served as the single repository of information about the 3D structures of proteins, nucleic acids, and co…
ghost updated
8 years ago
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**Lab Name**: Bioinformatics and Data Science in Biotechnology Lab
**Department**: Biotechnology and Biomedical Engineering
**List of Experiments and Repositories**:
1: Writing and…
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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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From [ticket in other repo](https://github.com/xchem/fragalysis-frontend/issues/424)
The following request, directly from the example doesn't work.
```python
import os
import tempfile
impo…
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Currently BioIn detects only the ligands associated with the PDB structures. Although it does not apparently affect the protein processing, many structures have a number of oligosaccharide molecules a…