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Hi Brian,
I have a gff3 (from EVM), that looks like this:
```
chr1 EVM mRNA 729007277 729024670 . + . ID=evm.model.contig1014.2;
chr1 EVM CDS 7…
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Hello,
I am encountering an issue when using molpc2 to predict the structure of large proteins with known stoichiometry information. For example, when I try to predict the structure of 1A8R (or 5BSE)…
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I was wondering if there's an elegant (easy) way to use the inbuilt `ProteinGraphDataset` class for making a PyTorch dataloader that can supply proteins in *pairs*, with an associated label.
Many …
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## *Repository Creation Request*
Use this to get your experiment repository created or updated on GitHub under Virtual Labs organization.
1. #### Coordinating Institute: IIT Guwahati
2. #### A…
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Hi, thanks for your great work. I have a general question about benchmarking the clustering performances of different methods.
In you figure 3 (also 4), you considered Moran's I score as a me…
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I am getting the peptide_map_detail.txt file but no peptide_map.txt.
`java -jar /net/noble/vol1/home/noble/pepmap-2.0.0.jar -i peptides.11647.tmp -d /net/noble/vol1/data/crux-datasets/2017tran-deno…
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Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh
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Hi!
I am trying to download the full db using Aspera and I got an error at step 9 :
Completed: 392708K bytes transferred in 58 seconds
(54553K bits/sec), in 14 files, 1 directory.
2022-02-15 …
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Update ProteinMetadata so that each Feature has a unique label.
i.e. - if there are multiple Features labeled "Disordered", they would become "Disordered_1", "Disordered_2", etc.
Definition of D…
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Creating a binder for this protein: https://alphafold.ebi.ac.uk/entry/Q8W3K0 and I'm getting this error both on T4's and A100's:
This error makes sense, but I'm confused as to how a protein that re…