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Hi,
I did run BiocCheck and I know that there are two errors:
[1] "Package must be removed from CRAN."
[2] "Maintainer must regi…
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The output of the crux usage message is broken. Any invocation of the usage message, 'crux help' or even just 'crux' with no arguments, or an invalid set of arguments results in the usage statement be…
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- quant isobaric fail because no reporter ions were detected. the parameters are the default for TMT10-MS3 workflow . I don't know what and if my parameters are wrong.
- log file
[log_2021-09…
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After well over two days of computation I was met with the following error message:
```
*******************************TOTAL TIME 314.775 MIN********************************
Traceback (most recen…
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- Describe the
[log_2021-08-05_11-29-12.txt](https://github.com/Nesvilab/FragPipe/files/6939813/log_2021-08-05_11-29-12.txt)
issue or question:
- Upload your log file
(If a log file hasn't …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/statOmics/TargetDecoy
Confirm the following by ed…
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**Describe the bug**
identical job ( both input and command arguments) give error message "
sh: 1: mv: not found
sh: 1: mv: not found
sh: 1: mv: not found"
**To Reproduce**
Steps to reproduce …
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-Just trying to use the standard Fragpipe tutorial steps to generate a spectral library from DDA files. I get most of it done I believe but the log has an odd trace at the end I'd like to know if it's…
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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SearchGUI 4.0.41 is stuck on this step (Processing identification files with PeptideShaker) since yesterday. I am using a 8core Tyrone CPU (32GB). I fed 6 .RAW files as input (I ain't sure if that oka…