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When I ran radsex process, I got the error "Could not open output file".
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Hi Thierry,
I am trying to convert a VCF to heirfstat format. But it gives an error I cannot understand. Can you please tell me what is wrong here.
my code
library(devtools)
library(hierfstat…
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Hi, I am trying to use your filter_fis function on a .vcf file. I dont think there are any issues with the vcf file since the format was produced as a direct output of another pipeline (i.e., i haven…
mep19 updated
4 years ago
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Hi Jim,
First of all, thank you very much for making this nice function!
I am trying to apply it to my project right now but there is one major error that I can not fix, although which may not d…
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Hi,
I am trying to filter ddrad reads to a reference genome, but it doesn't seem to be working properly. The ipyrad run finishes as it should (much quicker than expected) but there are large amoun…
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Hello,
I'm trying to create the files, when I use preview I can see it.
```
(easySFS) isisarantes@MacBook-Pro easySFS % ./easySFS.py -i /Users/isisarantes/OneDrive/Doutorado/RADseq_analysis/deli…
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I'm leaving these comments as an 'issue' in response to the pdf sent out on 17/04/2020 (commit `3704689a2b294ee9b2ac67c441362d6820092cf0`)--it's a more detailed response than what we talked about at l…
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Hello,
I am having an issue plotting the GADMA results. Mainly, the divergence times are pretty far off where I expected them to be. I am not 100% sure that I am doing it correctly, so I have expla…
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Hello,
I am using Tess3r for genome scan on radseq data of a tetraploid species (this is the only tool I am aware of which accepts polyploid data and can perform genome scan). I have 16000 SNPs from …
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Hello Galaxy Team,
I'm running some online RADseq analysis at Galaxy Europe Server and would like to run BayeScan on my data. Although this function is not directly available, there is a repository…