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Hi @mikemc
Thanks for your email.
I am new to R and Phyloseq. However, I need to analyze the 16S rRNA data (please see the attached file for data format). I have the otu-tables & absolute abund…
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micropower seems like a great tool and I've been trying to use it to get the general range of effect sizes that could be detectable with power 90% at different sample sizes for detecting differences i…
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Hello,
I was having trouble with the dist.seq command taking a long time to work and crashing at some point in the middle due to a network error, so I tried using the cluster.split command and foun…
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Hej Johnson,
thanks for the iNEXT package, it has many useful features. However, I work with microbial datasets where it tends to have (very) long runtimes. A typical dataset of mine has maybe 50 t…
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@rjleveque @ketch I went over the second part, took me a bit longer than expected. I think it is overall in good shape, but of course there are a couple of thinks we could still improve. My comments/s…
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Calculate the average and standard deviation of multiple OTU tables generated by repeated sampling to equal depth. Include the option to first arcsin transform the OTU abundances expressed as a propor…
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_From @lkursell on February 12, 2016 22:39_
Displaying ST2's progress, like the original, is very helpful for making sure commands are getting executed correctly, especially given the time required f…
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Dear SQUATI-SIM author,
I am using your tool to simulate the needed number of reads to cover most of the transcripts of the transcriptome of my organism of interest, by drawing a read rarefaction c…
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The recent changes in the VL integrator (i.e. beyond [this commit](https://github.com/cholla-hydro/cholla/commit/5bdd42b8b728e4fdc39bfc783a3d38b4e88e239a)) are causing a large number of thread crashes…