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https://github.com/clinical-genomics-uppsala/Twist_DNA/blob/8a1d086f244ed17e4b638bd54bd42a92513b729a/src/Snakemake/rules/QC/fastqc.smk#L38-L39
https://github.com/clinical-genomics-uppsala/Twist_DNA…
Smeds updated
3 years ago
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When I run the virsorter setup command, it always report error.
(virsort2) bo@bioinofo2:~$ virsorter setup -d virsorter_db/
[2024-10-24 02:47 INFO] VirSorter 2.2.4
[2024-10-24 02:47 INFO] /home/b…
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- use extension smk instead of sm for syntax highlights on GitHub
- check the new feature that supports using existing bash scripts rather than inlining them in the smk files for cleaner smk files
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**Snakemake version** 6.1.1 and git version 6.1.1+7.g5349f2a4
**Describe the bug**
Errors are thrown if we have modified rules made using the `use rule ... as ... with:` syntax in a Snakemake mo…
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**Snakemake version**
```bash
$ snakemake --version
7.8.5
```
**Describe the bug**
A Snakefile that uses rule inheritance cannot be imported as a module, snakemake gives an error.
**Logs*…
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Hello, I want to reproduce the four models in the [kipoi manuscript](https://github.com/kipoi/manuscript)，but according to the download link, I did not find the `dbscSNV.zip `data file.
```python
rule read_distribution:
input:
bam = os.path.join(…
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Defect Description :
When we click on the Self evaluation link in the "Deflection in Beam” experiment ,the content is not displayed on the screen where the content should be present in the page
Act…
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```
$ xenon --json scheduler slurm --location local:// list --identifier 194906
{
"statuses": [
{
"jobIdentifier": "194906",
"name": "smk.delly_s",
"state": "COMPLETED",…