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Hello
I reproduce your research for my study of snATACseq & snRNAseq.
I downloaded all of your metadata in GEO and Synapse database, but I can't find the file included peak_region_fragments va…
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- [x] snRNAseq MDD https://pubmed.ncbi.nlm.nih.gov/32341540/
- [x] snRNAseq ASD https://pubmed.ncbi.nlm.nih.gov/31097668/
- [ ] DOUBLE CHECK: bulk sex differences SCZ https://www.biologicalpsychiatr…
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See Longo-Lab/PS19_C31_snRNAseq#1.
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Hi Sam,
I am interested in using your hdWGCNA package for snRNAseq analysis. However, when I tried your data and code in tutorial. I got this error for the MetacellsByGroups function:
"Error in Me…
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On TEST, dataset 488f364142c308a9692e0b529f6697dd has the data type snRNAseq-10xGenomics-v2 but the ingest-ui is not displaying it as the selected data type on edit screen. And when we tried to re-sel…
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Dear developers,
thanks for this great tool! I am working with a snRNAseq dataset trying to identify a signaling network between resident cell types in a model for inflammation. I just followed yo…
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MAGMA:
* paper https://github.com/LieberInstitute/10xPilot_snRNAseq-human/search?q=magma
* I believe that there was a major bug in version 1.0.7 that got fixed in 1.0.8 but I can't recall the rele…
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- [ ] Merge demographics + cellranger metrics + pre-sequencing metrics + QC metrics (number dropped, pre-emptyDroplets number, discarded by x or y reason, etc)
- [x] Annotation details (cor values…
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- [x] run spatial registration with top 100 genes instead of all genes
- [x] make spatial registration plot for just the excitatory clusters.
- [ ] for plots comparing against my data, add biologic…
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- [x] Upload and run on Azimuth Human Motor cortex app
- [ ] Compare with current HC annotations, use to help annotate Excit layers