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Dear Developer,
I am using SPADES 3.10 for 50X illumina and 10X pacbio assembly. The genome size is 6G and my RAM is 1T.
My command line is:
spades.py --careful -t 24 -m 980 --dataset dataset.yaml…
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### Description of bug
My HPC job is set to run for 3 + days, I sent 3 jobs all of them terminate at 13 hours mark idk what is wrong
### spades.log
[spades.log](https://github.com/user-attachments…
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 on a Mac M3 Max with macOS Sonoma, but fail with a 'failed to limit memory' error…
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Hi Everyone! This is my first time with SPAdes and Unicycler so I am not familiarised with any of these tools. I'm running Unicycler to perform a hybrid assembly using long and short reads in Mac Os C…
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Hello,
I have tried this a couple of times and spades (in unicycler) failed to produce an assembly.
Error log:
== Running assembler: K27
0:00:00.000 4M / 4M INFO General …
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😛
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The FASTQ parsing is currently tightly coupled with spades output. Simple nodes with no intra-sequence branching fail to load. It appears this is due to shapes-specific parsing of node names and expli…
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Hi everyone,
I need a little help to deal with my assembly. I usually use Spades but since I found that Unicycler could improve my assembly, I always perform the two separately and Unicycler get the…
fetyj updated
5 years ago