-
Oi, muito legal o pipeline de vocês.
Estou tentando rodá-lo, mas ocorre um erro no passo de computação da diversidade individual. Saberia informar qual o problema?
Segue o erro:
```
Creating a B…
-
I'm using the GTDB with kraken2 and get a .txt & .report file out, but I don't understand how to convert the GTDB ID of the .txt file to NCBI ID? There are several tools to convert between GTDB & NCBI…
-
Hi,
I'd like to build a custom database for some of NCBI refseq sequences.
Before that, I attempted to build a very small database, but It was failed.
Here is the directory structure for buildi…
-
Hi
just to make sure that's proper way. I am building a kraken2 custom db using only my own fasta:
1. kraken2-build --add-to-library file1.fasta --db test
2. kraken2-build --add-to-library file2.fa…
-
I would love to get Blast2lca working as it claims to do exactly what I need, and seems fast and nicely put together. However, the results I'm getting from it contain mostly unknown values, or are fro…
-
I'm unable to build using docker:
```
erik@copito [01:10:50 PM] [~/blobtools] [master]
-> % docker build -t drl/blobtools .
```
This crashes and burns:
```
Collecting package metadata (r…
-
Any plans on making KEMET a legit python package that can be installed via pip (from pypi)? I see that the `setup.py` is non-standard. Converting the current code in the setup.py to a separate script …
-
Hey! Hope you are staying safe for those difficult moments.
Do you have any news for this message in a previous issue that was closed??? I'm getting the same error but using the --use-ftp. Although…
-
In order to make the NCBI taxonomy more comparable with another one that simply consists of the ranks: domain, phylum, clade, order, family, genus, species; I would like to contract the taxonomy to th…
-
Are these false positives or misinterpretations stemming from my misunderstanding of exactly how the NCBI use the ``names.dmp`` file? Examples triggered by 2021-01-01 taxdump:
```
WARNING: Synonym…