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Brought to the attention of the Oncology WG by @mgurley :
![image](https://github.com/OHDSI/OncologyWG/assets/20713572/3c431a94-c415-4a2e-bd2f-1ae9b0e93679)
[direct Teams link](https://teams.mic…
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We have imported neoplasms (also labeled as tumors) from NCIT and placed them under cancer from the Disease Ontology based on the alternative label 'malignant neoplasm'. We should reorganize these so …
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I'm confused about the distinction between these in ORDO. Neither term has definitions, so we have to try and infer from the names or the graph what they mean precisely. The naming is confusing since …
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Hi,
I see the vcf is generated from deepvariant.
Is it more reasonable to use deepsomatic to call snv in tumors, as opposed to using deepvariant?
I am confused about the choice of vcf, shoul…
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New, publicly available dataset of 11,078 RNAseq + clinical childhood cancer tumors.
[Xena data](https://xenabrowser.net/datapages/?hub=https://treehouse.xenahubs.net:443)
[Blog Post](http://www…
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Hi Andreu,
Thank you so much for the MCGPU. I now need the material files for the tumor, Would it be possible to also provide a file for the tumor?
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Update the definitions of THindex
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about 'np.where(livertumor == 2)' in preprocessing.py,
What does ‘livertumor == 2‘ mean?
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RNAseq z score calculations - especially in cohorts, like `pbta_all` which have many different kinds of brain tumors, or even more intense, openpedcan, using a flat z score across all #samples per ge…
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It Starts with The Cell.