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Hi Chi,
I never have done a Chord Diagram and I wanted to know: the represented correlations are positive correlations? (I mean, they indicate the presence of one Phylum in presence of another, isn…
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Hi,
I was wondering if there was a way to add multiple taxa names to the gephx file after using trans_network$cal_network. e.g if I wanted to colour nodes by phyla, but label them with family, wou…
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9de029f9d00e2957e001042724053c9fbbfbe400
[Progress Report](https://github.com/STAT540-UBC/team_Undecided/blob/master/progress_report.md)
@ppavlidis @singha53 @farnushfarhadi @santina
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If the rownames of my expression matrix occur repeated ones, then can DESMOND use for it? Thanks!
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Hi! Thank you for creating an awesome package!
I have the following situation in Metacells Construction: When I put K = 20, the number of MetaCells in groupA is 1074 and groupB is 242. When I put K…
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PyWGCNA will consider each variable as a single bool trait when more than two variables, such as time points (4mon, 8mon, 12mon, 18mon). I am not sure how to interpret the p-value and correlation for …
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Dear @smorabit,
Thanks a lot for all your help with my questions regarding hdWGCNA.
I was wondering if you have any advice on how to get fewer, but more specific modules.
Many thanks,
Paria
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I'm interested in particular GO terms in my input files, but they do not get included in the "main data table" (GO division)_(input filename). I understand that all original GO terms aren't actually a…
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- [x] Trim adapter content
- [x] STAR alignment
- [x] Transcript quantification
- [x] Differential expression analysis
- [x] WGCNA
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Hi,
Thanks a lot for this very useful package.
I am facing a little issue when using PlotDMEsLollipop. The output of the plot seems odd
```
group1 % filter(group == "group1") %>% rownames
group2 …