issues
search
mortazavilab
/
PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad415/7218311
MIT License
192
stars
46
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
analyseWGCNA subplot error
#107
Lachiemckbioinfo
opened
1 week ago
4
gene name question
#106
chulexuexibiedebushihewo
opened
1 week ago
1
Tutorial data
#105
Lachiemckbioinfo
closed
1 week ago
0
Visualization error
#104
gerapskx
closed
1 week ago
6
Pandas error
#103
yashraj59
closed
1 week ago
4
module_trait_relationships_heatmap
#102
bsb2014
closed
2 weeks ago
4
SystemExit: All your genes ended up in one modules! Reconsider your input parameters in order to get more modules.
#101
simonekats
opened
1 month ago
6
how to set figsize
#100
bsb2014
closed
1 month ago
2
Update Quick_Start.ipynb
#99
stutimishra7
closed
1 month ago
0
2
#98
sujit1012
closed
1 month ago
0
Several errors when performing findModules steps individually
#97
MRimoldi
opened
1 month ago
8
In the module Network Plot, Can we label the node as gene_name instead of gene_id ?
#96
davidbinod
closed
1 month ago
2
Re-naming modules
#95
NezaCankar
closed
1 week ago
1
findModules() inappropriately passes all kwargs to pickSoftThreshold() and cuttreeHybrid()
#94
JShermanK1
closed
3 months ago
2
a issue for findModules()
#93
songbowen1995
closed
3 months ago
3
Seeking help on `order` Parameter Usage and Metadata Color Settings
#92
KGZaker
closed
3 months ago
6
What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)?
#91
perseeker
closed
3 months ago
1
Doubt on application
#90
fmalmeida
closed
4 months ago
1
error experienced in tutorial
#89
chakitarora
closed
4 months ago
6
Genes and samples switched in goodSamplesGenes
#88
lorenzoamir
closed
5 months ago
3
How adjust parameter in functions??
#87
ZivTQ
closed
5 months ago
0
getDatTraits method might not be suitable for continuous traits.
#86
lwtan90
closed
5 months ago
1
RecursionError when run pyWGCNA_ct.preprocess()
#85
yizhang-zoey
closed
5 months ago
1
Image too large. How suppress drawing when using pyWGCNA_obj.preprocess() ?
#84
yizhang-zoey
closed
5 months ago
3
ask for some questions
#83
chulexuexibiedebushihewo
closed
5 months ago
3
Correlation matrix
#82
papelypluma
closed
6 months ago
6
Gene Significance
#81
richard-k-perez
closed
6 months ago
1
varianceStabilizingTransformation and input data
#80
agolicz
closed
6 months ago
3
Unable to run the package due to pandas issue. I am attaching the screenshot for the error generated.
#79
tanush84
closed
6 months ago
6
AttributeError: 'WGCNA' object has no attribute 'expressionList'
#78
xiongsircool
closed
7 months ago
1
More flexibility for functional enrichment analysis
#77
GentlemanOfFate
closed
6 months ago
1
WGCNA.CoexpressionModulePlot error regarding NDFrame.where
#76
GentlemanOfFate
closed
6 months ago
1
Dependencies requiring updates (pandas and pyvis)
#75
GentlemanOfFate
closed
6 months ago
3
Different results generated by v1.15 and v1.20
#74
hanbinlu
closed
6 months ago
1
module-traitRelationships negative correlation p values incorrect
#73
richard-k-perez
closed
7 months ago
3
calculate Gene Significance
#72
bsb2014
opened
8 months ago
6
functional_enrichment_analysis ()
#71
bsb2014
closed
8 months ago
2
Synchronize documentation and class parameters
#70
ofarrelle
closed
7 months ago
1
WGCNA and GeneExp class documentation does not match parameter names
#69
ofarrelle
closed
6 months ago
1
How to add color for metadata consisting of continuous variables and plot the module-trait relationship?
#68
scuhkf
closed
8 months ago
1
ValueError: 'box_aspect' and 'fig_aspect' must be positive
#67
BKAmos
closed
8 months ago
10
Error in .analyseWGCNA() resulting from matplotlib .shrunk_to_aspect()
#66
VincentRagusa
closed
8 months ago
1
How to change parameter in findModules()???
#65
ZivTQ
closed
9 months ago
1
No enrich terms when cutoff = 1 in module black
#64
DDXRBHCN
closed
8 months ago
1
Issue with analyseWGCNA
#63
jumoline
closed
10 months ago
2
Error installing on python 3.11 on Windows and running moduleEigengenes
#62
dmitriikamaevqia
closed
6 months ago
3
missing data 3xTgAD_paper
#60
jumoline
closed
10 months ago
4
What does this error mean when i run '.findModules()' ?
#59
chakitarora
closed
10 months ago
3
Multiple errors running under DOMINO
#58
jumoline
closed
10 months ago
7
UnboundLocalError: cannot access local variable 'merge' where it is not associated with a value
#57
li1553770945
closed
10 months ago
4
Next