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https://doi.org/10.1101/159756 (http://www.biorxiv.org/content/early/2017/07/05/159756.1)
> Though it is widely recognized that data sharing enables faster scientific progress, the sensible need to…
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Hello, I've been trying to run Minimac4 to impute a cohort of roughly 300,000 individuals. When attempting to impute a single chunk of 5 Mb +/- 1 Mb on chromosome 11, I am routinely encountering a 'S…
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@mbaudis @pnrobinson
The PRC required a more extensible replacement for `HtsFile`. The comments and responses quoted below are from the PRC review.
PRC initial comment:
> Even among “hts_fil…
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When running processReference on a hg38 aligned reference, the following error occurs. Minimac3 does not seem to like chr1-chr22 and is expecting 1-22. What is the best way to handle hg38 aligned v…
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What would be some industrial applications of connectomics? Would we be able to eventually develop mind reading? Lie detection? Or possibly identifying regions of target for electromagnetic stimulatio…
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Curious to know if/when you might support raw genotypes in RaPID?
Thanks!
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Will need @d6e 's help with a sample file so I can write the parser for this.
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## 1. Bug description
PolyFun is not installed. Reinstall echofinemap with PolyFun? This will automatically restart R. (y/n):
Error in echofinemap::POLYFUN_install() : PolyFun is not installed.
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## Description
Currently management of data authorizations is performed according to "data source" - that is, the project that produced the data. This is limiting! We believe some representation of "…
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**Is your feature request related to a problem? Please describe.**
VCF preprocessing, currently done by bcftools, requires `##FILTER`, `##FORMAT`, `##INFO`, and `##contig`, which is too strict.
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arine updated
1 month ago