-
I would like to add a `anndata.merge` function, with similar functionality to `xarray.merge`.
## Example
```python
>>> expr_adata
AnnData object with n_obs × n_vars = 3000 × 15000
layers:…
-
**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
-
Hi, thank you for the nice tool!
I'm trying to run my own visium data with standard Space Ranger output(filtered_feature_bc_matrix.h5 and spatial/tissue_positions_list.csv are provided), but got this…
-
Hello-
We're publishing some data as MuData in the HuBMAP consortium, and we're also planning to use it to store descriptions and annotations of objects in segmentation masks.
These descriptions…
-
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
Cell In[8], line 1
----> 1 RNA_ATAC_model = s…
-
**Is your feature request related to a problem? Please describe.**
Reading and writing MuData is a bit slow sometimes. For example, after doing some TCR sequence analyses the MuData takes longer to r…
racng updated
2 weeks ago
-
Without being familiar with the schema, it's not clear which `obs` columns users can selected using the `obs_value_filter` argument.
For example, users can use `sex_ontology_term_id` or human-readab…
-
Hey! I thought plotting `.var` columns in `sc.pl.violin()` worked previously (and the error message seems to suggest this as well).
I am doing the following:
```
adata_counts.var['dropout_per_gen…
-
### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [ ] (optio…
-
pinging interested parties @lmweber @drighelli @HelenaLC @ivirshup
Nice to meet you all! I believe with some we crossed paths in some zoom dungeons or email thread. I'd like to use this issue to k…
giovp updated
4 months ago