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Hi i am getting this error for the same code and same versions of packages i used earlier where i did not got any errors.
[archr error.docx](https://github.com/user-attachments/files/15744035/archr.e…
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seTSS
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Hello,
I am analyzing 10x multiome data and looking to aggregate macs2 called peaks so I cannot use the 10x-generated feature_linkage.bedpe file to aggregate peaks. As suggested in a previous [post](…
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First of all, excellent work! Congratulations!
I have faced an issue trying to reproduce your analysis. In line 52 of script in snATAC_seq/data_integration)/05_clustering.ipynb, it seems that rowna…
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This is confusing and sometimes causes install errors.
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When running ArchR with default parameters (threads set to 1) and inputting the ArrowFiles command into the terminal to ascertain whether any ArrowFiles have been created I receive an error: Character…
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I ran into a small issue when running addGroupCoverages on my terrible non-model species genome.
[ArchR-addGroupCoverages-765f62f12d5f-Date-2021-04-18_Time-23-35-59.log](https://github.com/Greenle…
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**Describe the bug**
Hi. According to the log file, I keep getting an error which is found in `addIterativeLSI` for one of Arrow files generated using the tutorial dataset when I run the `addDoubletS…
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After I subset markerspeaks, I enriched motif. Why are there subordinate errors? When I use the overall markerspeaks, I can do it normally.
```
markersPeaks
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When executing the code provided, the following error occurs:
```
> mRCCv5
An object of class Seurat
22921 features across 102723 samples within 1 assay
Active assay: RNA (22921 features,…