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Right now, the rule looks like this:
* If reaction2 is enabled_by entity1
* And reaction1 has entity1 as an input
* And reaction1 has entity2 as an input
* And reaction1 has complex1 conta…
goodb updated
2 years ago
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These thoughts are based on our discussions around #409 and other single-cell stuff. However, as they are rather generic in nature I created a new ticket. As I assume that issues like these will come …
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Hi, I just report problematic named entities I found using `en_core_sci_sm`, to improve the model. Most of them contain unbalanced brackets.
```
(-2)-0-(+2
(-8
(= control values
(= controls
(=…
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A table of known nsp13 inhibitors in the literature can be found here. Users are encouraged to add known inhibitors that are not already in the table following the format shown:
![image](https://us…
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- download a data of choice from 10x genomics with `sc.datasets_visium_sge()` (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- run the scanpy tutorial,…
giovp updated
3 years ago
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There are at least two dozen bacterial sequences of concern that bind host plasminogen to their surfaces. This bound plasmin is generally converted to plasmin which can then mediate serum resistance f…
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Hi,
Sorry for spamming the issues. I am having an error come up whenever I try to add a whitelist.
essentially the run report gives me no additional explanation other than:
failed: 11 at run…
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I used "trinotate_report_summary.pl" to generate a "cXp_summary.html" file, however, this html file shows up blank when opened in Google Chrome or Firefox.
Why?
and, here are the contents of the…
ljyls updated
3 years ago
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Hello!
I'd like to test LIANA+ with Visium HD data (which can have more than 500k cells/bins/spots). With this being said, I'd like to know if the features are optimized for such high resolution da…
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will it work with pre-driven plasticity, can we handle delays correctly, will it be efficient?