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Good morning,
We have been using the Clonmapper protocol and we are at the stage of testing our barcode diversity after electroporation. We did a 138M reads sequencing and unfortunately our diversi…
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I haven't figured out what to call this, but the table below is an incomplete answer to the question:
what’s the largest collection of hashes present in a single genome that leaves you in doubt as …
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right now it's not really specified anywhere 😆
```
ident,superkingdom,phylum,class,order,family,genus,species
GCF_014075335.1,d__Bacteria,p__Proteobacteria,c__Gammaproteobacteria,o__Enterobacteral…
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Request to update the get-ncbi-data to format the taxon table as it would appear in SILVA. Currently, the scripts populates all ranks regardless of presence in TaxID lineage.
Example of actual:
…
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Hello there,
I encountered this when trying the workflow:
> nextflow run Arcadia-Science/prehgt -r v1.0.0 -profile conda --outdir fructi --input fructilactobacillus.tsv --blast_db inputs/nr_rep…
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It seems if GOTTCHA fails to find anything, then the temp folder remains after the run is complete. Everything _seems_ to of fine, but this makes me wonder if the tool carried out the analysis correct…
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Hi, I have downloaded 'bacteria' library by typing "kraken2-build --download-library bacteria --db $DBNAME". and I found it's pretty large in size, around 81GB. I'm not sure if that's OK and how much …
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Hi,
I see that CLAP is designed to run on eukaryote genomes.
How to adapt it to run on bacteria?
I changed `make_annotation.sh` by adding species _escherichia_coli_k_12_ and adjusted ftp site and…
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I am currently implementing NCBI taxonomy in CoNekT Grasses Microbiome. I believe this is something we should keep synchronized (Plant Cell Wall Knowledgebase, PAGED and CoNekT Grasses Microbiome). @…
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Hello,
I have encountered the followinf error:
more SHADDVT3_asm_bp_hap1_p_ctg/run_blobtools_create.log
Reading all TSV files in ../window_stats
Traceback (most recent call last):
File "/s…