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Hi @XiaoTaoWang
When running the `segment-cnv` module, I keep running into the error below.
When running at 10kb, the CNV profile was full of 0's, and I got this error on the first chromosome.
W…
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Hi,
I would like to detect differential peaks between two different conditions by `macs2 bdgdiff` and use `-d1` depth_condition1 `-d2` depth_condition2. But I don't know whether to normalize the d…
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Hi there,
Thank you for your contribution to the Python version of the DI TAD calling algorithm, which is more convenient to use. I have one question regarding the output files of .DIs.bedGraph and…
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Hi nuoyazhou2,
i am trying to run the code but sonehow it gives me an error message when running the following command:
```
if (grepl("^chr(\\d{1,2}|X|Y)$", bait_ch)) {
system(paste("sed -i …
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Hi,
I have tried to use your circlehunter tool to run our ATAC data, but the output file in one of the steps “rule largeinsert_ratio” haven‘t come out without any useful error message.
Could you pl…
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Hi, I have the same issue with version 1.3 as others show previously using 1.2. I got the error message below, and I am using the cut & tag H3K27me3, IgG data from Henikoff lab.
Calling enriched r…
Qi-ly updated
3 years ago
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Hi,
Thank you for all the effort you have put into this technique and the code.
I have unfortunately run into a few issues with installation. I ran installation with your annotation and genome fi…
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Hello,
I am using megalodon to identify methylations in the whole genome, not only in the CpG islands.
I was wondering if it is possible to use Methplotlib to visualise also those regions outside …
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Hi! I have analyzed CutAndRun data using bowtie and SEACR. But the shape of peaks after opening the bigwig file in IGV is a bit flat.
![image](https://user-images.githubusercontent.com/83512737/1167…
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Hello,
I have assembled a mitogenome with mitoHiFi using a reference genome from a closely related species, starting from Hifiasm contigs, I could get the final.mitogenome.fasta , then I remapped H…