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The [example LEMS file for converted Channelpedia channels](https://github.com/OpenSourceBrain/BlueBrainProjectShowcase/blob/master/Channelpedia/LEMS_Test_Cav2.1.xml) works with jnml LEMS, but not wit…
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Hi, just found your library! Very exciting.
Were you planning to add support for ODE simulation with diffrax?
I use diffrax to simulate my models and optimistix to fit them, and more generally wo…
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```
What steps will reproduce the problem?
1. Create a cBNGL model
2. Include the writeSBML() action
What is the expected output? What do you see instead?
Given a reaction @c1:S1 + @c1:S2 -> @c1:S3 …
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Providing API for other apps like cy3fluxviz.
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Notes for work on https://github.com/ModellingWebLab/project_issues/issues/8
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Most of the species contain annotations to the secondary ChEBI metabolites.
For instance in model `iAB_RBC_283`.
```
…
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I have created an example network in this repository to experiment with, where I created a simple feed-forward network and exported it to ONNX. After experimenting with ONNX, I believe we should not u…
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### Background
A biological pathway is a network consisting of interactions between biological molecules (e.g. proteins and chemicals) in a cell that lead to a certain product or a change. Research…
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Some studies examine predictions for reaction fluxes. It would be great to return these values.
We we're working with BioModels to add buttons such as "Simulate with GillesPy2", "Simulate with COPA…
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### Summary
We have partnered with [BioModels](https://www.ebi.ac.uk/biomodels/) at [EMBL-EBI](https://www.ebi.ac.uk/) (Hinxton) to explore potential ways to incorporate Ersilia's models into well-es…